RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA565584" and tax_phylum = "Parabasalia"

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tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA565584 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9482610 9482610 PRJNA565584_P_NODE_10008_length_1071_cov_6.677355_g9099_i0 PRJNA565584 10008 1071 6.677355 71.51447205 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 62.1 1.81e-4   NTclustered gi|2806442743|ref|XM_068514405.1| 1144522 g9099 i0 88.462 0.0830999066293184 52 5 5 1 885 935 839 890 Tritrichomonas foetus Digestive cysteine proteinase 1 (LCP1), partial mRNA blastn 89 62.1 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
18408023 18408023 PRJNA565584_P_NODE_197495_length_245_cov_0.895349_g196343_i0 PRJNA565584 197495 245 0.895349 2.19360505 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 58.4 4.75e-4   NTclustered gi|2806481198|ref|XM_068511487.1| 1144522 g196343 i0 100 0.126530612244898 31 0 13 0 6 36 307 277 Tritrichomonas foetus Ras-related protein Rab-6.1 (TRFO_37538), partial mRNA blastn 31 58.4 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;