RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA565584" and tax_phylum = "Nitrososphaerota"

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tax_superkingdom 1

tax_phylum 1

  • Nitrososphaerota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA565584 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6933865 6933865 PRJNA565584_P_NODE_182286_length_248_cov_0.880000_g181134_i0 PRJNA565584 182286 248 0.88 2.1824 Candidatus Nitrosocosmicus oleophilus 1353260 Archaea Archaea 394 3.24e-105   NTclustered gi|937513727|gb|CP012850.1| 1353260 g181134 i0 95.528 0.991935483870968 246 11 99 0 1 246 813503 813748 Candidatus Nitrosocosmicus oleophilus strain MY3, complete genome blastn 246 394 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Candidatus Nitrosocosmicus Candidatus Nitrosocosmicus oleophilus
9482845 9482845 PRJNA565584_P_NODE_111808_length_287_cov_1.350467_g110656_i0 PRJNA565584 111808 287 1.350467 3.87584029 Candidatus Nitrosocosmicus oleophilus 1353260 Archaea Archaea 58.4 5.7e-4   NTclustered gi|937513727|gb|CP012850.1| 1353260 g110656 i0 100 0.205574912891986 31 0 11 0 201 231 128547 128577 Candidatus Nitrosocosmicus oleophilus strain MY3, complete genome blastn 59 58.4 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Candidatus Nitrosocosmicus Candidatus Nitrosocosmicus oleophilus
19682264 19682264 PRJNA565584_P_NODE_184236_length_248_cov_0.880000_g183084_i0 PRJNA565584 184236 248 0.88 2.1824 Candidatus Nitrososphaera evergladensis 1459637 Archaea Archaea 52.8 0.022   NTclustered gi|665992324|gb|CP007174.1| 1459636 g183084 i0 100 0.112903225806452 28 0 11 0 44 71 583202 583175 Candidatus Nitrososphaera evergladensis SR1, complete genome blastn 28 52.8 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Nitrososphaera Candidatus Nitrososphaera evergladensis
25361496 25361496 PRJNA565584_P_NODE_51560_length_414_cov_1.862170_g50409_i0 PRJNA565584 51560 414 1.86217 7.7093838 Nitrososphaera 497726 Archaea Archaea 52.8 0.04   NTclustered gi|647810480|gb|CP007536.1| 926571 g50409 i0 100 0.202898550724638 28 0 7 0 159 186 2040378 2040351 Nitrososphaera viennensis EN76, complete genome blastn 84 52.8 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Nitrososphaera Nitrososphaera viennensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;