RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA565584" and tax_phylum = "Microsporidia"

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tax_superkingdom 1

tax_phylum 1

  • Microsporidia · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA565584 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1829759 1829759 PRJNA565584_P_NODE_102742_length_294_cov_3.411765_g101590_i0 PRJNA565584 102742 294 3.411765 10.0305891 Nosema bombycis 27978 Fungi Fungi 496 1.05e-135   NTclustered gi|134285545|gb|EF103588.1| 27978 g101590 i0 97.595 0.989795918367347 291 4 98 3 1 288 7740 8030 Nosema bombycis Sec61gamma (Sec61gamma) gene, complete cds; and unknown genes blastn 291 496 1 Eukaryota Opisthokonta Fungi Microsporidia     Nosematidae Nosema Nosema bombycis
20959366 20959366 PRJNA565584_P_NODE_5617_length_1447_cov_60.444687_g5010_i0 PRJNA565584 5617 1447 60.444687 874.63462089 Pseudoloma neurophilia 146866 Fungi Fungi 2481 0   NTclustered gi|11993647|gb|AF322654.1| 146866 g5010 i0 99.632 85.8244644091223 1357 3 94 1 1 1355 1358 2 Pseudoloma neurophilia small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 124188 2481 1 Eukaryota Opisthokonta Fungi Microsporidia       Pseudoloma Pseudoloma neurophilia
23509258 23509258 PRJNA565584_P_NODE_3999_length_1699_cov_54.491390_g3544_i0 PRJNA565584 3999 1699 54.49139 925.8087161 Pleistophora mulleri 249366 Fungi Fungi 1611 0   NTclustered gi|134147422|gb|EF119339.1| 249366 g3544 i0 83.936 37.0971159505592 1743 211 100 58 1 1699 1371 3088 Pleistophora mulleri 16S ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence blastn 63028 1611 1 Eukaryota Opisthokonta Fungi Microsporidia     Pleistophoridae Pleistophora Pleistophora mulleri

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;