RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA565584" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA565584 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
555877 555877 PRJNA565584_P_NODE_190721_length_246_cov_0.890173_g189569_i0 PRJNA565584 190721 246 0.890173 2.18982558 Gemmatimonas aurantiaca 173480 Bacteria Bacteria 449 6.74e-122   NTclustered gi|226088597|dbj|AP009153.1| 379066 g189569 i0 99.593 1 246 1 100 0 1 246 463486 463731 Gemmatimonas aurantiaca T-27 DNA, complete genome blastn 246 449 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas aurantiaca
6932442 6932442 PRJNA565584_P_NODE_107706_length_289_cov_2.569444_g106554_i0 PRJNA565584 107706 289 2.569444 7.42569316 Gemmatimonas aurantiaca 173480 Bacteria Bacteria 529 1.01e-145   NTclustered gi|226088597|dbj|AP009153.1| 379066 g106554 i0 99.654 1 289 1 100 0 1 289 1313889 1313601 Gemmatimonas aurantiaca T-27 DNA, complete genome blastn 289 529 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas aurantiaca
22233428 22233428 PRJNA565584_P_NODE_216958_length_239_cov_2.409639_g215806_i0 PRJNA565584 216958 239 2.409639 5.75903721 Pseudogemmatithrix spongiicola 3062599 Bacteria Bacteria 237 5.5300000000000005e-58   NTclustered gi|2557479348|gb|CP130613.1| 3062599 g215806 i0 84.583 2.00836820083682 240 35 100 2 1 239 2584324 2584086 Pseudogemmatithrix spongiicola strain 318 chromosome, complete genome blastn 480 237 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Pseudogemmatithrix Pseudogemmatithrix spongiicola
23508205 23508205 PRJNA565584_P_NODE_184819_length_247_cov_1.862069_g183667_i0 PRJNA565584 184819 247 1.862069 4.59931043 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 335 1.9799999999999992e-87   NTclustered gi|2874253728|emb|OY969570.1| 412054 g183667 i0 91.129 131.157894736842 248 20 100 2 1 247 173519 173765 MAG: uncultured Gemmatimonadales bacterium isolate MFD02840.bin.c.1 genome assembly, chromosome: 1 blastn 32396 335 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;