RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA565584" and tax_phylum = "Blastocladiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Blastocladiomycota · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA565584 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
555280 555280 PRJNA565584_P_NODE_155641_length_258_cov_2.491892_g154489_i0 PRJNA565584 155641 258 2.491892 6.42908136 Blastocladiella emersonii 4808 Fungi Fungi 159 1.3499999999999999e-34   NTclustered gi|684989|gb|L22497.1|BSIAHSP70X 4808 g154489 i0 78.346 18.484496124031 254 49 97 6 7 257 2758 2508 Blastocladiella emersonii heat shock protein (hsp70) gene, complete cds blastn 4769 159 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Blastocladiella Blastocladiella emersonii
1832817 1832817 PRJNA565584_P_NODE_65782_length_366_cov_1.924915_g64631_i0 PRJNA565584 65782 366 1.924915 7.0451889 Catenaria sp. 2420186 Fungi Fungi 318 3.1e-82   NTclustered gi|1866582684|gb|MT730859.1| 2420186 g64631 i0 82.703 29.0109289617486 370 53 100 7 1 366 4107 4469 Catenaria sp. isolate JEL0871 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 10618 318 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Catenariaceae Catenaria Catenaria sp.
8208790 8208790 PRJNA565584_P_NODE_18447_length_746_cov_1.239227_g17357_i0 PRJNA565584 18447 746 1.239227 9.24463342 Blastocladiella emersonii 4808 Fungi Fungi 1002 0   NTclustered gi|117422539|gb|EF064246.1| 4808 g17357 i0 91.105 65.1045576407507 742 62 99 4 1 740 566 1305 Blastocladiella emersonii elongation factor alpha-like protein mRNA, complete cds blastn 48568 1002 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Blastocladiella Blastocladiella emersonii
19682629 19682629 PRJNA565584_P_NODE_20696_length_696_cov_2.309791_g19589_i0 PRJNA565584 20696 696 2.309791 16.07614536 Blastocladiella emersonii 4808 Fungi Fungi 545 2.61e-150   NTclustered gi|117422539|gb|EF064246.1| 4808 g19589 i0 82.126 65.1551724137931 649 104 92 8 23 665 721 79 Blastocladiella emersonii elongation factor alpha-like protein mRNA, complete cds blastn 45348 545 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Blastocladiella Blastocladiella emersonii
21535772 21535772 PRJNA565584_P_NODE_120137_length_282_cov_0.885167_g118985_i0 PRJNA565584 120137 282 0.885167 2.49617094 Eukaryota 2759 Fungi Fungi 215 3.13e-51   NTclustered gi|111054102|gb|DQ787196.1| 4808 g118985 i0 81.004 95.1347517730496 279 45 98 6 8 282 2005 2279 Blastocladiella emersonii heat shock protein 90 kDa (hsp90) gene, complete cds blastn 26828 215 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Blastocladiella Blastocladiella emersonii
22234430 22234430 PRJNA565584_P_NODE_64438_length_370_cov_1.377104_g63287_i0 PRJNA565584 64438 370 1.377104 5.0952848 Blastocladiella emersonii 4808 Fungi Fungi 392 1.82e-104   NTclustered gi|117422539|gb|EF064246.1| 4808 g63287 i0 86.592 52.9810810810811 358 45 97 1 1 358 430 76 Blastocladiella emersonii elongation factor alpha-like protein mRNA, complete cds blastn 19603 392 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Blastocladiella Blastocladiella emersonii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;