RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA565584" and tax_clade = "delta/epsilon subdivisions"

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tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 2 ✖

bioproject 1

  • PRJNA565584 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1133698 1133698 PRJNA565584_P_NODE_105961_length_291_cov_1.059633_g104809_i0 PRJNA565584 105961 291 1.059633 3.08353203 Bacteria 2 Bacteria Bacteria 296 1.13e-75   NTclustered gi|297180392|gb|GU474842.1| 710820 g104809 i0 85.315 234.034364261168 286 42 98 0 6 291 12580 12865 Uncultured delta proteobacterium HF0010_01J10 genomic sequence blastn 68104 298 0.993288590604027 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium HF0010_01J10
20959251 20959251 PRJNA565584_P_NODE_49937_length_421_cov_1.353448_g48786_i0 PRJNA565584 49937 421 1.353448 5.69801608 uncultured delta proteobacterium HF0070_10I02 710824 Bacteria Bacteria 339 2.7799999999999997e-88   NTclustered gi|297181000|gb|GU474857.1| 710824 g48786 i0 81.818 111.676959619952 429 55 99 22 1 417 6349 6766 Uncultured delta proteobacterium HF0070_10I02 genomic sequence blastn 47016 339 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium HF0070_10I02

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;