RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

12 rows where analysis = "blastn", bioproject = "PRJNA565584" and tax_clade = "Apusozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_clade 1

  • Apusozoa · 12 ✖

bioproject 1

  • PRJNA565584 · 12 ✖

analysis 1

  • blastn · 12 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
554720 554720 PRJNA565584_P_NODE_127981_length_277_cov_1.014706_g126829_i0 PRJNA565584 127981 277 1.014706 2.81073562 Thecamonas trahens 529818 Root_unresolved Root_unresolved 193 1.44e-44   NTclustered gi|923125359|ref|XM_013900694.1| 461836 g126829 i0 84 19.5703971119134 200 32 72 0 36 235 330 529 Thecamonas trahens ATCC 50062 calmodulin (AMSG_07687), mRNA blastn 5421 193 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
556352 556352 PRJNA565584_P_NODE_220241_length_231_cov_2.734177_g219089_i0 PRJNA565584 220241 231 2.734177 6.31594887 Singekia franciliensis 2925418 Root_unresolved Root_unresolved 239 1.48e-58   NTclustered gi|2206682165|gb|OM966638.1| 2925418 g219089 i0 85.654 1.02597402597403 237 22 100 11 1 231 6943 6713 Singekia franciliensis strain ORSAYFEB19APU1 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 237 239 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Singekia Singekia franciliensis
3105289 3105289 PRJNA565584_P_NODE_108303_length_289_cov_1.425926_g107151_i0 PRJNA565584 108303 289 1.425926 4.12092614 Thecamonas trahens 529818 Root_unresolved Root_unresolved 268 2.44e-67   NTclustered gi|923137248|ref|XM_013906635.1| 461836 g107151 i0 83.681 98.5536332179931 288 43 99 2 1 286 1217 1502 Thecamonas trahens ATCC 50062 inositol-3-phosphate synthase (AMSG_00912), mRNA blastn 28482 268 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
5661232 5661232 PRJNA565584_P_NODE_66985_length_363_cov_1.486207_g65834_i0 PRJNA565584 66985 363 1.486207 5.39493141 Thecamonas trahens 529818 Root_unresolved Root_unresolved 156 2.55e-33   NTclustered gi|923125900|ref|XM_013900964.1| 461836 g65834 i0 85.811 9.6831955922865 148 19 40 2 202 348 147 1 Thecamonas trahens ATCC 50062 60S ribosomal protein L39 (AMSG_06579), partial mRNA blastn 3515 156 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
5661546 5661546 PRJNA565584_P_NODE_85785_length_321_cov_1.161290_g84633_i0 PRJNA565584 85785 321 1.16129 3.7277409 Thecamonas trahens 529818 Root_unresolved Root_unresolved 254 7.69e-63   NTclustered gi|923130274|ref|XM_013903149.1| 461836 g84633 i0 88.942 74.3115264797508 208 19 64 4 64 269 53 258 Thecamonas trahens ATCC 50062 14-3-3 family protein epsilon (AMSG_04940), partial mRNA blastn 23854 254 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
9483551 9483551 PRJNA565584_P_NODE_148168_length_263_cov_2.105263_g147016_i0 PRJNA565584 148168 263 2.105263 5.53684169 Thecamonas trahens 529818 Root_unresolved Root_unresolved 121 6.489999999999999e-23   NTclustered gi|923134252|ref|XM_013905138.1| 461836 g147016 i0 79.365 1.24334600760456 189 25 68 10 83 261 200 384 Thecamonas trahens ATCC 50062 adenine nucleotide translocator (AMSG_02751), mRNA blastn 327 121 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
10758987 10758987 PRJNA565584_P_NODE_119649_length_282_cov_1.373206_g118497_i0 PRJNA565584 119649 282 1.373206 3.87244092 Thecamonas trahens 529818 Root_unresolved Root_unresolved 167 8.9e-37   NTclustered gi|923125065|ref|XM_013900547.1| 461836 g118497 i0 80.93 8.3936170212766 215 37 76 4 43 255 866 654 Thecamonas trahens ATCC 50062 60S ribosomal protein L3 (AMSG_07514), mRNA blastn 2367 167 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
13308927 13308927 PRJNA565584_P_NODE_133811_length_273_cov_1.300000_g132659_i0 PRJNA565584 133811 273 1.3 3.549 Thecamonas trahens 529818 Root_unresolved Root_unresolved 143 1.45e-29   NTclustered gi|923125900|ref|XM_013900964.1| 461836 g132659 i0 90 19.5018315018315 110 11 40 0 8 117 37 146 Thecamonas trahens ATCC 50062 60S ribosomal protein L39 (AMSG_06579), partial mRNA blastn 5324 143 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
14583296 14583296 PRJNA565584_P_NODE_109852_length_288_cov_1.432558_g108700_i0 PRJNA565584 109852 288 1.432558 4.12576704 Thecamonas trahens 529818 Root_unresolved Root_unresolved 134 9.25e-27   NTclustered gi|923139350|ref|XM_013907686.1| 461836 g108700 i0 79.793 3.67361111111111 193 31 66 8 100 288 275 463 Thecamonas trahens ATCC 50062 S-phase kinase-associated protein 1 (AMSG_00283), mRNA blastn 1058 134 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
15859624 15859624 PRJNA565584_P_NODE_44593_length_447_cov_2.216578_g43442_i0 PRJNA565584 44593 447 2.216578 9.90810366 Thecamonas trahens 529818 Root_unresolved Root_unresolved 193 2.44e-44   NTclustered gi|923135694|ref|XM_013905859.1| 461836 g43442 i0 82.222 23.1051454138702 225 38 50 2 163 386 913 690 Thecamonas trahens ATCC 50062 V-type H(+)-translocating pyrophosphatase, variant (AMSG_01802), mRNA blastn 10328 193 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
20957346 20957346 PRJNA565584_P_NODE_148377_length_263_cov_1.621053_g147225_i0 PRJNA565584 148377 263 1.621053 4.26336939 Thecamonas trahens 529818 Root_unresolved Root_unresolved 65.8 3.08e-6   NTclustered gi|923130972|ref|XM_013903498.1| 461836 g147225 i0 91.489 1.75285171102662 47 4 18 0 195 241 2627 2673 Thecamonas trahens ATCC 50062 cell division control protein (AMSG_04168), partial mRNA blastn 461 65.8 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
22234551 22234551 PRJNA565584_P_NODE_69858_length_355_cov_2.670213_g68707_i0 PRJNA565584 69858 355 2.670213 9.47925615 Thecamonas trahens 529818 Root_unresolved Root_unresolved 124 7.02e-24   NTclustered gi|923118232|ref|XM_013897139.1| 461836 g68707 i0 83.969 0.738028169014085 131 19 37 2 221 350 233 362 Thecamonas trahens ATCC 50062 60S ribosomal protein L7 (AMSG_11553), partial mRNA blastn 262 124 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;