RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA564810" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA564810 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17131872 17131872 PRJNA564810_S_NODE_3434_length_286_cov_10.402715_g3412_i0 PRJNA564810 3434 286 10.402715 29.7517649 Pristionchus sp. 14 RS5230 452808 Nematoda Nematoda 110 1.55e-19   NTclustered gi|150984645|gb|EF634984.1| 452808 g3412 i0 80.851 0.881118881118881 141 25 49 2 4 143 100 239 Pristionchus sp. 14 RS5230 small subunit ribosomal protein 27 (rps-27) mRNA, complete cds blastn 252 110 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus sp. 14 RS5230
22231287 22231287 PRJNA564810_S_NODE_7958_length_213_cov_2.304054_g7936_i0 PRJNA564810 7958 213 2.304054 4.90763502 Pristionchus sp. 10 RS5133 452805 Nematoda Nematoda 147 8.359999999999999e-31   NTclustered gi|150982251|gb|EF634714.1| 452805 g7936 i0 85.612 23.9014084507042 139 20 65 0 75 213 303 165 Pristionchus sp. 10 RS5133 large subunit ribosomal protein 30 (rpl-30) mRNA, partial cds blastn 5091 147 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus sp. 10 RS5133

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;