RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA564810" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 4 ✖

bioproject 1

  • PRJNA564810 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9482557 9482557 PRJNA564810_S_NODE_928_length_412_cov_1.959654_g906_i0 PRJNA564810 928 412 1.959654 8.07377448 Prototheca bovis 2509265 Plants Plants 150 1.36e-31   NTclustered gi|1770690688|ref|NC_045058.1| 2509265 g906 i0 81.283 23.9126213592233 187 33 45 2 226 411 3155 2970 Prototheca zopfii strain SAG 2021 mitochondrion, complete genome blastn 9852 150 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Prototheca Prototheca bovis
13308226 13308226 PRJNA564810_S_NODE_1431_length_366_cov_13.026578_g1409_i0 PRJNA564810 1431 366 13.026578 47.67727548 Chlamydomonas reinhardtii 3055 Plants Plants 60.2 2.08e-4   NTclustered gi|2082249810|ref|XM_043063891.1| 3055 g1409 i0 100 0.087431693989071 32 0 9 0 48 79 4560 4529 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_07g316900v5), mRNA blastn 32 60.2 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
18406212 18406212 PRJNA564810_S_NODE_7795_length_215_cov_1.360000_g7773_i0 PRJNA564810 7795 215 1.36 2.924 Trebouxia sp. SL0000003 3350044 Plants Plants 54.7 0.005   NTclustered gi|2917929806|emb|OZ234924.1| 3350044 g7773 i0 100 0.134883720930233 29 0 13 0 151 179 244081 244109 Trebouxia sp. SL0000003 genome assembly, chromosome: 19 blastn 29 54.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. SL0000003
24085440 24085440 PRJNA564810_S_NODE_459_length_507_cov_14.190045_g438_i0 PRJNA564810 459 507 14.190045 71.94352815 Trebouxiophyceae 75966 Plants Plants 63.9 2.29e-5   NTclustered gi|371782132|emb|HE610164.1| 33092 g438 i0 95 12.9151873767258 40 2 8 0 84 123 76 37 Koliella longiseta plastid partial 23S rRNA gene, strain SAG 470-1 blastn 6548 63.9 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Koliellaceae Koliella Koliella longiseta

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;