RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA564810" and tax_clade = "Discoba"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Discoba · 2 ✖

bioproject 1

  • PRJNA564810 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4381643 4381643 PRJNA564810_S_NODE_5244_length_249_cov_2.217391_g5222_i0 PRJNA564810 5244 249 2.217391 5.52130359 Naegleria lovaniensis 51637 Heterolobosea other_Eukaryota 52.8 0.023   NTclustered gi|2119433545|ref|XM_044692354.1| 51637 g5222 i0 100 0.112449799196787 28 0 11 0 113 140 3731 3758 Naegleria lovaniensis uncharacterized protein (C9374_002888), partial mRNA blastn 28 52.8 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria lovaniensis
24780412 24780412 PRJNA564810_S_NODE_6760_length_226_cov_1.633540_g6738_i0 PRJNA564810 6760 226 1.63354 3.6918004 Jakoba bahamiensis 221721 Root_unresolved Root_unresolved 82.4 2.57e-11   NTclustered gi|501595162|ref|NC_021126.1| 221721 g6738 i0 80.342 22.3318584070796 117 15 50 8 24 136 1527 1639 Jakoba bahamiensis strain ATCC 50695 mitochondrion, complete genome blastn 5047 82.4 1 Eukaryota Discoba       Jakobida Jakobidae Jakoba Jakoba bahamiensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;