RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA564013" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA564013 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9476720 9476720 PRJNA564013_P_NODE_173208_length_331_cov_2.407407_g170358_i0 PRJNA564013 173208 331 2.407407 7.96851717 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 248 3.7e-61   NTclustered gi|60698656|gb|AY915745.1| 6182 g170358 i0 98.571 7.29607250755287 140 2 42 0 153 292 467 328 Schistosoma japonicum SJCHGC09658 protein mRNA, partial cds blastn 2415 248 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
12030755 12030755 PRJNA564013_P_NODE_348330_length_199_cov_12.442029_g345478_i0 PRJNA564013 348330 199 12.442029 24.75963771 Dicrocoelium dendriticum 57078 Platyhelminthes Platyhelminthes 52.8 0.017   NTclustered gi|687688146|emb|LK600640.1| 57078 g345478 i0 100 0.14070351758794 28 0 14 0 38 65 487 514 Dicrocoelium dendriticum genome assembly D_dendriticum_Leon_v1_0_4, scaffold DDEL_scaffold0190466 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Dicrocoeliidae Dicrocoelium Dicrocoelium dendriticum
19678538 19678538 PRJNA564013_P_NODE_371576_length_176_cov_21.443478_g368724_i0 PRJNA564013 371576 176 21.443478 37.74052128 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 291 2.89e-74   NTclustered gi|56757963|gb|AY815390.1| 6182 g368724 i0 97.11 122.3125 173 3 100 2 1 171 2334 2162 Schistosoma japonicum SJCHGC01951 protein mRNA, complete cds blastn 21527 291 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
24776000 24776000 PRJNA564013_P_NODE_254680_length_257_cov_7.617347_g251828_i0 PRJNA564013 254680 257 7.617347 19.57658179 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 374 4.3899999999999995e-99   NTclustered gi|60698688|gb|AY915747.1| 6182 g251828 i0 98.131 1.98832684824903 214 4 83 0 23 236 165 378 Schistosoma japonicum SJCHGC09661 protein mRNA, partial cds blastn 511 374 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;