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contig_metadata

31 rows where analysis = "blastn", bioproject = "PRJNA564013" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 31 ✖

tax_clade 1

bioproject 1

  • PRJNA564013 · 31 ✖

analysis 1

  • blastn · 31 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
547784 547784 PRJNA564013_P_NODE_158481_length_344_cov_3.130742_g155631_i0 PRJNA564013 158481 344 3.130742 10.76975248 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 403 7.799999999999997e-108   NTclustered gi|325195102|emb|FR825896.1| 890382 g155631 i0 87.791 68.8866279069767 344 42 100 0 1 344 39 382 Albugo laibachii Nc14, genomic contig CONTIG_2949_NC14_v4_517_10745 blastn 23697 403 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
552434 552434 PRJNA564013_P_NODE_55721_length_534_cov_2.545455_g52945_i0 PRJNA564013 55721 534 2.545455 13.5927297 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 948 0   NTclustered gi|166044495|emb|CU367404.1| 100861 g52945 i0 99.806 129.073033707865 516 1 97 0 19 534 652 137 Aphanomyces euteiches cDNA blastn 68925 948 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
2407086 2407086 PRJNA564013_P_NODE_163462_length_339_cov_11.035971_g160612_i0 PRJNA564013 163462 339 11.035971 37.41194169 root 1 Root_unresolved Root_unresolved 540 5.599999999999998e-149   NTclustered gi|166046566|emb|CU367683.1| 100861 g160612 i0 100 85.8938053097345 292 0 86 0 23 314 292 1 Aphanomyces euteiches cDNA blastn 29118 540 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
3101017 3101017 PRJNA564013_P_NODE_271783_length_244_cov_7.213115_g268931_i0 PRJNA564013 271783 244 7.213115 17.6000006 Saprolegnia diclina 112098 SAR_Eukaryotes SAR_Eukaryotes 134 7.640000000000001e-27   NTclustered gi|669146513|ref|XM_008610597.1| 1156394 g268931 i0 80.814 26.0614754098361 172 32 70 1 31 201 477 306 Saprolegnia diclina VS20 40S ribosomal protein S20 mRNA blastn 6359 134 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina
4374711 4374711 PRJNA564013_P_NODE_136264_length_364_cov_1131.726073_g133416_i0 PRJNA564013 136264 364 1131.726073 4119.48290572 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 569 7.709999999999999e-158   NTclustered gi|325194239|emb|FR825095.1| 890382 g133416 i0 98.754 92.706043956044 321 3 88 1 44 364 890 1209 Albugo laibachii Nc14, genomic contig CONTIG_1625_NC14_v4_1818_619 blastn 33745 569 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
4960357 4960357 PRJNA564013_P_NODE_257244_length_255_cov_7.144330_g254392_i0 PRJNA564013 257244 255 7.14433 18.218041500000002 root 1 Root_unresolved Root_unresolved 387 5.589999999999998e-103   NTclustered gi|166046576|emb|CU367693.1| 100861 g254392 i0 99.528 85.3647058823529 212 1 83 0 22 233 572 361 Aphanomyces euteiches cDNA blastn 21768 387 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
4960567 4960567 PRJNA564013_P_NODE_286064_length_234_cov_4.826590_g283212_i0 PRJNA564013 286064 234 4.82659 11.2942206 root 1 Root_unresolved Root_unresolved 403 5.02e-108   NTclustered gi|166046472|emb|CU367589.1| 100861 g283212 i0 100 93.2393162393162 218 0 93 0 1 218 432 649 Aphanomyces euteiches cDNA blastn 21818 403 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
8784831 8784831 PRJNA564013_P_NODE_208567_length_298_cov_3.172996_g205716_i0 PRJNA564013 208567 298 3.172996 9.45552808 Peronosporaceae 4777 SAR_Eukaryotes SAR_Eukaryotes 361 4.049999999999999e-95   NTclustered gi|2248513076|ref|NC_063796.1| 4786 g205716 i0 88.629 100.318791946309 299 30 99 4 2 298 833 537 Phytophthora cryptogea culture CBS:418.71 mitochondrion, complete genome blastn 29895 364 0.991758241758242 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cryptogea
10061259 10061259 PRJNA564013_P_NODE_329308_length_209_cov_0.878378_g326456_i0 PRJNA564013 329308 209 0.878378 1.83581002 Peronosporaceae 4777 SAR_Eukaryotes SAR_Eukaryotes 329 7.56e-86   NTclustered gi|2026389858|gb|MT032128.1| 4796 g326456 i0 95.192 99.3349282296651 208 10 99 0 1 208 15913 16120 Phytophthora palmivora mitochondrion, complete genome blastn 20761 329 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora palmivora
11336052 11336052 PRJNA564013_P_NODE_364169_length_188_cov_4.094488_g361317_i0 PRJNA564013 364169 188 4.094488 7.69763744 root 1 Root_unresolved Root_unresolved 307 3.1100000000000005e-79   NTclustered gi|166046470|emb|CU367587.1| 100861 g361317 i0 100 89.8297872340426 166 0 88 0 1 166 473 308 Aphanomyces euteiches cDNA blastn 16888 307 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
13885379 13885379 PRJNA564013_P_NODE_131991_length_369_cov_5.493506_g129143_i0 PRJNA564013 131991 369 5.493506 20.27103714 root 1 Root_unresolved Root_unresolved 616 9.909999999999999e-172   NTclustered gi|166046719|emb|CU367829.1| 100861 g129143 i0 99.412 91.189701897019 340 0 92 1 22 359 776 437 Aphanomyces euteiches cDNA blastn 33649 616 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
13886162 13886162 PRJNA564013_P_NODE_262031_length_252_cov_1.361257_g259179_i0 PRJNA564013 262031 252 1.361257 3.43036764 root 1 Root_unresolved Root_unresolved 466 6.89e-127   NTclustered gi|166044576|emb|CU367485.1| 100861 g259179 i0 100 60.3293650793651 252 0 100 0 1 252 524 775 Aphanomyces euteiches cDNA blastn 15203 466 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
14580078 14580078 PRJNA564013_P_NODE_326852_length_210_cov_1.516779_g324000_i0 PRJNA564013 326852 210 1.516779 3.1852359 Plasmopara viticola 143451 SAR_Eukaryotes SAR_Eukaryotes 204 4.8099999999999994e-48   NTclustered gi|16555222|gb|AY052544.1| 143451 g324000 i0 90.323 16.7571428571429 155 15 74 0 23 177 169 15 Plasmopara viticola chitin synthase 2 (CHS2) gene, partial cds blastn 3519 204 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Plasmopara Plasmopara viticola
15161346 15161346 PRJNA564013_P_NODE_79272_length_455_cov_5.700508_g76448_i0 PRJNA564013 79272 455 5.700508 25.9373114 root 1 Root_unresolved Root_unresolved 680 0   NTclustered gi|166046723|emb|CU367833.1| 100861 g76448 i0 100 80.5802197802198 368 0 81 0 24 391 497 130 Aphanomyces euteiches cDNA blastn 36664 680 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
15852842 15852842 PRJNA564013_P_NODE_268953_length_246_cov_8.448649_g266101_i0 PRJNA564013 268953 246 8.448649 20.78367654 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 372 1.5e-98   NTclustered gi|166046619|emb|CU367736.1| 100861 g266101 i0 100 82.739837398374 201 0 82 0 23 223 230 30 Aphanomyces euteiches cDNA blastn 20354 372 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
16435175 16435175 PRJNA564013_P_NODE_286313_length_234_cov_3.439306_g283461_i0 PRJNA564013 286313 234 3.439306 8.04797604 root 1 Root_unresolved Root_unresolved 364 2.37e-96   NTclustered gi|166044518|emb|CU367427.1| 100861 g283461 i0 100 16.2735042735043 197 0 84 0 21 217 819 623 Aphanomyces euteiches cDNA blastn 3808 364 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
17710450 17710450 PRJNA564013_P_NODE_294294_length_229_cov_2.303571_g291442_i0 PRJNA564013 294294 229 2.303571 5.27517759 root 1 Root_unresolved Root_unresolved 342 1.08e-89   NTclustered gi|166044539|emb|CU367448.1| 100861 g291442 i0 99.468 82.4366812227074 188 1 82 0 24 211 395 208 Aphanomyces euteiches cDNA blastn 18878 342 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
17710861 17710861 PRJNA564013_P_NODE_373214_length_174_cov_8.053097_g370362_i0 PRJNA564013 373214 174 8.053097 14.01238878 Pseudoperonospora 143452 SAR_Eukaryotes SAR_Eukaryotes 279 6.17e-71   NTclustered gi|927372602|ref|NC_027859.1| 143453 g370362 i0 97.576 94.8793103448276 165 1 94 3 1 163 4004 3841 Pseudoperonospora cubensis mitochondrion, complete genome blastn 16509 279 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Pseudoperonospora Pseudoperonospora cubensis
18401237 18401237 PRJNA564013_P_NODE_226275_length_282_cov_2.099548_g223424_i0 PRJNA564013 226275 282 2.099548 5.92072536 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 468 2.18e-127   NTclustered gi|166046475|emb|CU367592.1| 100861 g223424 i0 99.609 17.5815602836879 256 1 91 0 22 277 338 593 Aphanomyces euteiches cDNA blastn 4958 468 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
18982923 18982923 PRJNA564013_P_NODE_139115_length_362_cov_2.691030_g136267_i0 PRJNA564013 139115 362 2.69103 9.7415286 Pythiaceae 4782 SAR_Eukaryotes SAR_Eukaryotes 387 8.279999999999998e-103   NTclustered gi|2248513842|ref|NC_063815.1| 907947 g136267 i0 88.554 88.0966850828729 332 20 91 7 1 331 38190 37876 Phytopythium vexans culture CBS:119.80 mitochondrion, complete genome blastn 31891 387 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Phytopythium Phytopythium vexans
19675718 19675718 PRJNA564013_P_NODE_220676_length_287_cov_2.234513_g217825_i0 PRJNA564013 220676 287 2.234513 6.41305231 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 492 1.32e-134   NTclustered gi|166046581|emb|CU367698.1| 100861 g217825 i0 100 17.6968641114983 266 0 93 0 22 287 434 169 Aphanomyces euteiches cDNA blastn 5079 492 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
19678209 19678209 PRJNA564013_P_NODE_351476_length_197_cov_5.470588_g348624_i0 PRJNA564013 351476 197 5.470588 10.77705836 Peronospora tabacina 230439 SAR_Eukaryotes SAR_Eukaryotes 298 1.98e-76   NTclustered gi|948299304|ref|NC_028331.1| 230439 g348624 i0 93.909 99.6954314720812 197 12 100 0 1 197 20670 20474 Peronospora tabacina isolate 968-J2 mitochondrion, complete genome blastn 19640 298 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Peronospora Peronospora tabacina
20258811 20258811 PRJNA564013_P_NODE_265656_length_249_cov_2.452128_g262804_i0 PRJNA564013 265656 249 2.452128 6.10579872 root 1 Root_unresolved Root_unresolved 418 1.9299999999999995e-112   NTclustered gi|166046615|emb|CU367732.1| 100861 g262804 i0 100 89.8875502008032 226 0 91 0 24 249 1 226 Aphanomyces euteiches cDNA blastn 22382 420 0.995238095238095 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
20259618 20259618 PRJNA564013_P_NODE_67756_length_490_cov_2.508159_g64950_i0 PRJNA564013 67756 490 2.508159 12.2899791 root 1 Root_unresolved Root_unresolved 857 0   NTclustered gi|166044558|emb|CU367467.1| 100861 g64950 i0 99.575 94.7877551020408 471 0 96 2 20 490 477 9 Aphanomyces euteiches cDNA blastn 46446 857 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
20950937 20950937 PRJNA564013_P_NODE_201477_length_305_cov_1.331967_g198626_i0 PRJNA564013 201477 305 1.331967 4.06249935 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 562 1.06e-155   NTclustered gi|166044588|emb|CU367497.1| 100861 g198626 i0 100 47.5409836065574 304 0 99 0 1 304 541 844 Aphanomyces euteiches cDNA blastn 14500 562 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
21534913 21534913 PRJNA564013_P_NODE_364357_length_187_cov_12.103175_g361505_i0 PRJNA564013 364357 187 12.103175 22.63293725 root 1 Root_unresolved Root_unresolved 305 1.11e-78   NTclustered gi|166044581|emb|CU367490.1| 100861 g361505 i0 100 88.2085561497326 165 0 88 0 23 187 122 286 Aphanomyces euteiches cDNA blastn 16495 305 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
22225354 22225354 PRJNA564013_P_NODE_17718_length_864_cov_8.405978_g15569_i0 PRJNA564013 17718 864 8.405978 72.62764992 Phytophthora richardiae 127443 SAR_Eukaryotes SAR_Eukaryotes 298 1.01e-75   NTclustered gi|93139337|gb|DQ361214.1| 127443 g15569 i0 81.622 36.7268518518519 370 58 42 9 502 863 843 476 Phytophthora richardiae strain MG 42-2 NADH dehydrogenase subunit 1 (ND1) gene, partial cds; mitochondrial blastn 31732 298 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora richardiae
22808538 22808538 PRJNA564013_P_NODE_112558_length_392_cov_2.567976_g109716_i0 PRJNA564013 112558 392 2.567976 10.06646592 root 1 Root_unresolved Root_unresolved 468 3.14e-127   NTclustered gi|166044582|emb|CU367491.1| 100861 g109716 i0 99.611 47.3622448979592 257 0 66 1 114 370 39 294 Aphanomyces euteiches cDNA blastn 18566 468 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
24083983 24083983 PRJNA564013_P_NODE_224799_length_283_cov_4.184685_g221948_i0 PRJNA564013 224799 283 4.184685 11.84265855 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 255 1.85e-63   NTclustered gi|1770692515|ref|NC_045089.1| 555429 g221948 i0 84.074 101.222614840989 270 37 95 2 2 271 35608 35345 Phytophthora sansomeana mitochondrion, complete genome blastn 28646 257 0.992217898832685 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sansomeana
24084320 24084320 PRJNA564013_P_NODE_27519_length_719_cov_4.370821_g25017_i0 PRJNA564013 27519 719 4.370821 31.42620299 root 1 Root_unresolved Root_unresolved 1273 0   NTclustered gi|166046727|emb|CU367837.1| 100861 g25017 i0 99.57 96.4172461752434 698 3 97 0 1 698 776 79 Aphanomyces euteiches cDNA blastn 69324 1273 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
25358488 25358488 PRJNA564013_P_NODE_236640_length_273_cov_1.495283_g233788_i0 PRJNA564013 236640 273 1.495283 4.08212259 root 1 Root_unresolved Root_unresolved 464 2.72e-126   NTclustered gi|166044483|emb|CU367392.1| 100861 g233788 i0 100 91.5714285714286 251 0 92 0 1 251 48 298 Aphanomyces euteiches cDNA blastn 24999 464 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;