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contig_metadata

16 rows where analysis = "blastn", bioproject = "PRJNA564013" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 16 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA564013 · 16 ✖

analysis 1

  • blastn · 16 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3101207 3101207 PRJNA564013_P_NODE_281303_length_237_cov_40.068182_g278451_i0 PRJNA564013 281303 237 40.068182 94.96159134 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.021   NTclustered gi|1557394408|emb|LR031564.1| 45931 g278451 i0 100 0.118143459915612 28 0 12 0 1 28 23 50 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
3102402 3102402 PRJNA564013_P_NODE_342463_length_203_cov_1.429577_g339611_i0 PRJNA564013 342463 203 1.429577 2.90204131 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.018   NTclustered gi|1557394408|emb|LR031564.1| 45931 g339611 i0 100 0.137931034482759 28 0 14 0 1 28 23 50 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
6928162 6928162 PRJNA564013_P_NODE_270126_length_245_cov_44.913043_g267274_i0 PRJNA564013 270126 245 44.913043 110.03695535 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.022   NTclustered gi|1557394408|emb|LR031564.1| 45931 g267274 i0 100 0.114285714285714 28 0 11 0 1 28 25 52 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
6929957 6929957 PRJNA564013_P_NODE_362886_length_189_cov_17.093750_g360034_i0 PRJNA564013 362886 189 17.09375 32.3071875 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.016   NTclustered gi|1557394408|emb|LR031564.1| 45931 g360034 i0 100 0.148148148148148 28 0 15 0 1 28 25 52 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
9479486 9479486 PRJNA564013_P_NODE_319588_length_213_cov_30.013158_g316736_i0 PRJNA564013 319588 213 30.013158 63.92802654 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.019   NTclustered gi|1557394408|emb|LR031564.1| 45931 g316736 i0 100 0.131455399061033 28 0 13 0 186 213 50 23 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
9480928 9480928 PRJNA564013_P_NODE_59648_length_518_cov_6.914661_g56858_i0 PRJNA564013 59648 518 6.914661 35.81794398 Caenorhabditis elegans 6239 Nematoda Nematoda 60.2 3.03e-4   NTclustered gi|412981731|emb|FO081023.2| 6239 g56858 i0 93.023 0.166023166023166 43 0 8 2 364 406 22532 22493 Caenorhabditis elegans Cosmid K02G10, complete sequence blastn 86 60.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
10757336 10757336 PRJNA564013_P_NODE_83329_length_444_cov_17.501305_g80500_i0 PRJNA564013 83329 444 17.501305 77.7057942 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.043   NTclustered gi|1557394408|emb|LR031564.1| 45931 g80500 i0 100 0.0630630630630631 28 0 6 0 417 444 50 23 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
12027656 12027656 PRJNA564013_P_NODE_187970_length_317_cov_10.093750_g185120_i0 PRJNA564013 187970 317 10.09375 31.9971875 Rhabditis sp. DF5059 479136 Nematoda Nematoda 514 3.15e-141   NTclustered gi|158821900|gb|EU195964.1| 479136 g185120 i0 98.958 89.6813880126183 288 1 91 2 21 307 1871 2157 Rhabditis sp. DF5059 28S ribosomal RNA gene, partial sequence blastn 28429 514 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Rhabditis Rhabditis sp. DF5059
13302819 13302819 PRJNA564013_P_NODE_195411_length_310_cov_9.903614_g192560_i0 PRJNA564013 195411 310 9.903614 30.7012034 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.029   NTclustered gi|1557394408|emb|LR031564.1| 45931 g192560 i0 100 0.0903225806451613 28 0 9 0 1 28 25 52 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
13306804 13306804 PRJNA564013_P_NODE_71631_length_477_cov_12.711538_g68817_i0 PRJNA564013 71631 477 12.711538 60.63403626 Caenorhabditis elegans 6239 Nematoda Nematoda 56.5 0.004   NTclustered gi|2791366|emb|AL021180.1| 6239 g68817 i0 92.5 0.335429769392034 40 1 8 2 241 278 1349 1388 Caenorhabditis elegans YAC Y44F5A, complete sequence blastn 160 56.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
14577707 14577707 PRJNA564013_P_NODE_198512_length_307_cov_11.317073_g195661_i0 PRJNA564013 198512 307 11.317073 34.74341411 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.029   NTclustered gi|1557394408|emb|LR031564.1| 45931 g195661 i0 100 0.0912052117263844 28 0 9 0 1 28 23 50 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
14579646 14579646 PRJNA564013_P_NODE_303812_length_223_cov_2.160494_g300960_i0 PRJNA564013 303812 223 2.160494 4.81790162 Strongyloides papillosus 174720 Nematoda Nematoda 54.7 0.006   NTclustered gi|687022649|emb|LM525563.1| 174720 g300960 i0 100 0.130044843049327 29 0 13 0 131 159 302436 302464 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_scaffold0000008 blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
17127426 17127426 PRJNA564013_P_NODE_247314_length_263_cov_14.772277_g244462_i0 PRJNA564013 247314 263 14.772277 38.85108851 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.024   NTclustered gi|1557394408|emb|LR031564.1| 45931 g244462 i0 100 0.106463878326996 28 0 11 0 236 263 50 23 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
20951074 20951074 PRJNA564013_P_NODE_208797_length_298_cov_1.907173_g205946_i0 PRJNA564013 208797 298 1.907173 5.68337554 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.028   NTclustered gi|1557394408|emb|LR031564.1| 45931 g205946 i0 100 0.0939597315436242 28 0 9 0 271 298 50 23 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
22227644 22227644 PRJNA564013_P_NODE_297378_length_227_cov_2.337349_g294526_i0 PRJNA564013 297378 227 2.337349 5.30578223 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.02   NTclustered gi|1557394408|emb|LR031564.1| 45931 g294526 i0 100 0.123348017621145 28 0 12 0 1 28 23 50 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
24777696 24777696 PRJNA564013_P_NODE_340960_length_203_cov_9.767606_g338108_i0 PRJNA564013 340960 203 9.767606 19.82824018 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.018   NTclustered gi|1557394408|emb|LR031564.1| 45931 g338108 i0 100 0.137931034482759 28 0 14 0 1 28 26 53 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;