RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA564013" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA564013 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3102777 3102777 PRJNA564013_P_NODE_362163_length_190_cov_3.116279_g359311_i0 PRJNA564013 362163 190 3.116279 5.9209301 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 265 1.93e-66   NTclustered gi|2874253978|emb|OY970303.1| 412054 g359311 i0 94.706 558.68947368421 170 9 89 0 1 170 8175967 8176136 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 106151 265 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
10756770 10756770 PRJNA564013_P_NODE_54269_length_540_cov_2.649269_g51499_i0 PRJNA564013 54269 540 2.649269 14.3060526 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 749 0   NTclustered gi|2874253728|emb|OY969570.1| 412054 g51499 i0 93.491 162.457407407407 507 28 94 5 17 521 3431719 3431216 MAG: uncultured Gemmatimonadales bacterium isolate MFD02840.bin.c.1 genome assembly, chromosome: 1 blastn 87727 749 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
12611757 12611757 PRJNA564013_P_NODE_342250_length_203_cov_1.781690_g339398_i0 PRJNA564013 342250 203 1.78169 3.6168307 Bacteria 2 Bacteria Bacteria 82.4 2.26e-11   NTclustered gi|2518551241|emb|OX638340.1| 203437 g339398 i0 85.714 223.25615763546801 77 11 38 0 14 90 2533020 2533096 MAG: uncultured Gemmatimonadota bacterium isolate 6ed59a95-0d5b-4630-9937-108f2708d2fb genome assembly, chromosome: 1 blastn 45321 82.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         uncultured Gemmatimonadota bacterium
24778106 24778106 PRJNA564013_P_NODE_362400_length_190_cov_2.589147_g359548_i0 PRJNA564013 362400 190 2.589147 4.9193793 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 206 1.1799999999999999e-48   NTclustered gi|575456455|gb|CP007128.1| 861299 g359548 i0 87.931 2.09473684210526 174 21 92 0 5 178 3887578 3887405 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 398 206 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;