RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA564013" and tax_phylum = "Chlorobiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlorobiota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA564013 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8199539 8199539 PRJNA564013_P_NODE_113787_length_390_cov_7.097264_g110945_i0 PRJNA564013 113787 390 7.097264 27.6793296 Chlorobaculum tepidum 1097 Bacteria Bacteria 401 3.209999999999999e-107   NTclustered gi|21672293|gb|AE006470.1| 194439 g110945 i0 87.644 48.8846153846154 348 39 89 4 23 368 1777255 1777600 Chlorobium tepidum TLS, complete genome blastn 19065 401 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Chlorobaculum Chlorobaculum tepidum
8200015 8200015 PRJNA564013_P_NODE_1327_length_2446_cov_163.734172_g927_i0 PRJNA564013 1327 2446 163.734172 4004.93784712 Chlorobaculum tepidum 1097 Bacteria Bacteria 1027 0   NTclustered gi|21672293|gb|AE006470.1| 194439 g927 i0 83.438 42.8708094848733 1117 173 45 8 68 1178 1776261 1775151 Chlorobium tepidum TLS, complete genome blastn 104862 1027 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Chlorobaculum Chlorobaculum tepidum
21535110 21535110 PRJNA564013_P_NODE_6377_length_1321_cov_10.879365_g5082_i0 PRJNA564013 6377 1321 10.879365 143.71641165 Pseudomonadati 3379134 Bacteria Bacteria 542 6.58e-149   NTclustered gi|21672293|gb|AE006470.1| 194439 g5082 i0 87.315 45.9894019682059 473 60 36 0 1 473 1781645 1782117 Chlorobium tepidum TLS, complete genome blastn 60752 542 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Chlorobaculum Chlorobaculum tepidum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;