RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA564013" and tax_phylum = "Armatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA564013 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1827837 1827837 PRJNA564013_P_NODE_51602_length_551_cov_119.012245_g48844_i0 PRJNA564013 51602 551 119.012245 655.75746995 Capsulimonas corticalis 2219043 Bacteria Bacteria 110 3.17e-19   NTclustered gi|2240447379|dbj|AP025739.1| 2219043 g48844 i0 82.171 14.4882032667877 129 21 23 2 199 326 594078 594205 Capsulimonas corticalis AX-7 DNA, complete genome blastn 7983 110 1 Bacteria   Bacillati Armatimonadota Armatimonadia Capsulimonadales Capsulimonadaceae Capsulimonas Capsulimonas corticalis
8199302 8199302 PRJNA564013_P_NODE_103247_length_405_cov_1.619186_g100411_i0 PRJNA564013 103247 405 1.619186 6.5577033 Fimbriimonadales bacterium 2682145 Bacteria Bacteria 339 2.66e-88   NTclustered gi|2314715370|dbj|AP024673.1| 2682145 g100411 i0 81.728 1.9283950617284 405 74 100 0 1 405 1855511 1855915 MAG: Fimbriimonadales bacterium KatS3mg018 DNA, complete genome blastn 781 339 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales     Fimbriimonadales bacterium
10755244 10755244 PRJNA564013_P_NODE_313589_length_217_cov_2.647436_g310737_i0 PRJNA564013 313589 217 2.647436 5.74493612 Armatimonadetes bacterium Uphvl-Ar2 2004468 Bacteria Bacteria 255 1.36e-63   NTclustered gi|1199101103|gb|CP021424.1| 2004468 g310737 i0 92.222 0.95852534562212 180 14 83 0 22 201 989266 989087 Armatimonadetes bacterium Uphvl-Ar2 genome blastn 208 255 1 Bacteria   Bacillati Armatimonadota         Armatimonadetes bacterium Uphvl-Ar2

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;