RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA564013" and tax_kingdom = "Thermoproteati"

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tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

  • Thermoproteati · 3 ✖

bioproject 1

  • PRJNA564013 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1828684 1828684 PRJNA564013_P_NODE_96422_length_416_cov_8.081690_g93589_i0 PRJNA564013 96422 416 8.08169 33.6198304 Candidatus Nitrosocosmicus oleophilus 1353260 Archaea Archaea 730 0   NTclustered gi|937513727|gb|CP012850.1| 1353260 g93589 i0 98.554 0.997596153846154 415 3 99 3 5 416 1649352 1649766 Candidatus Nitrosocosmicus oleophilus strain MY3, complete genome blastn 415 730 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Candidatus Nitrosocosmicus Candidatus Nitrosocosmicus oleophilus
20949281 20949281 PRJNA564013_P_NODE_134357_length_367_cov_1.447712_g131509_i0 PRJNA564013 134357 367 1.447712 5.31310304 Pyrobaculum aerophilum 13773 Archaea Archaea 610 4.59e-170   NTclustered gi|18308975|gb|AE009441.1| 178306 g131509 i0 99.405 1.41961852861035 336 2 92 0 16 351 92718 93053 Pyrobaculum aerophilum str. IM2, complete genome blastn 521 610 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Thermoproteales Thermoproteaceae Pyrobaculum Pyrobaculum aerophilum
21533861 21533861 PRJNA564013_P_NODE_198257_length_308_cov_2.020243_g195406_i0 PRJNA564013 198257 308 2.020243 6.22234844 Saccharolobus 2100760 Archaea Archaea 52.8 0.029   NTclustered gi|1496296112|gb|CP011055.2| 2287 g195406 i0 100 1.27272727272727 28 0 9 0 237 264 1111878 1111851 Saccharolobus solfataricus strain SARC-B chromosome, complete genome blastn 392 52.8 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Sulfolobales Sulfolobaceae Saccharolobus Saccharolobus solfataricus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;