RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA564013" and tax_clade = "Metamonada"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Metamonada · 3 ✖

bioproject 1

  • PRJNA564013 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3099542 3099542 PRJNA564013_P_NODE_193763_length_312_cov_3.254980_g190912_i0 PRJNA564013 193763 312 3.25498 10.1555376 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 54.7 0.008   NTclustered gi|2806472865|ref|XM_068508731.1| 1144522 g190912 i0 94.444 0.115384615384615 36 1 11 1 41 75 865 900 Tritrichomonas foetus uncharacterized protein (TRFO_32860), partial mRNA blastn 36 54.7 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
10754016 10754016 PRJNA564013_P_NODE_247689_length_263_cov_4.712871_g244837_i0 PRJNA564013 247689 263 4.712871 12.39485073 Trichomonas vaginalis 5722 Parabasalia other_Eukaryota 52.8 0.024   NTclustered gi|2319582776|ref|XM_001582426.2| 412133 g244837 i0 100 0.106463878326996 28 0 11 0 37 64 2010 2037 Trichomonas vaginalis G3 EF-1 beta acid 2 family (TVAGG3_0999810), partial mRNA blastn 28 52.8 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
24772864 24772864 PRJNA564013_P_NODE_109980_length_395_cov_7.149701_g107139_i0 PRJNA564013 109980 395 7.149701 28.24131895 Monocercomonoides exilis 2049356 Preaxostyla other_Eukaryota 60.2 2.26e-4   NTclustered gi|2794950968|ref|XM_067869193.1| 2049356 g107139 i0 100 3.25316455696203 32 0 8 0 343 374 8342 8373 Monocercomonoides exilis putative Protein kinase domain (MONOS_1628), partial mRNA blastn 1285 60.2 1 Eukaryota Metamonada   Preaxostyla   Oxymonadida Polymastigidae Monocercomonoides Monocercomonoides exilis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;