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contig_metadata

30 rows where analysis = "blastn", bioproject = "PRJNA564013" and tax_clade = "Amoebozoa"

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tax_phylum 3

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 30 ✖

bioproject 1

  • PRJNA564013 · 30 ✖

analysis 1

  • blastn · 30 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
546440 546440 PRJNA564013_P_NODE_104841_length_402_cov_10.302053_g102005_i0 PRJNA564013 104841 402 10.302053 41.41425306 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 538 2.4299999999999993e-148   NTclustered gi|470393524|ref|XM_004334843.1| 1257118 g102005 i0 97.46 0.783582089552239 315 8 78 0 65 379 522 208 Acanthamoeba castellanii str. Neff ribosomal protein L11, domain containing protein (ACA1_094680), partial mRNA blastn 315 538 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
1825469 1825469 PRJNA564013_P_NODE_26202_length_735_cov_3.031157_g23734_i0 PRJNA564013 26202 735 3.031157 22.27900395 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 1057 0   NTclustered gi|470500808|ref|XM_004347041.1| 1257118 g23734 i0 96 3.2108843537415 650 26 91 0 70 719 647 1296 Acanthamoeba castellanii str. Neff glycosyl hydrolases family 25 subfamily protein (ACA1_384320), partial mRNA blastn 2360 1057 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
1825533 1825533 PRJNA564013_P_NODE_265722_length_249_cov_2.244681_g262870_i0 PRJNA564013 265722 249 2.244681 5.58925569 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 411 3.2299999999999996e-110   NTclustered gi|470516178|ref|XM_004352988.1| 1257118 g262870 i0 98.701 1.85542168674699 231 3 93 0 19 249 375 145 Acanthamoeba castellanii str. Neff C2 domain containing protein (ACA1_071340), partial mRNA blastn 462 411 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
1827831 1827831 PRJNA564013_P_NODE_5122_length_1445_cov_7.677746_g3983_i0 PRJNA564013 5122 1445 7.677746 110.9434297 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 1849 0   NTclustered gi|47717680|gb|AY604040.1| 5755 g3983 i0 97.339 1.95294117647059 1090 26 75 3 175 1263 1 1088 Acanthamoeba castellanii mannose-binding protein (MBP1) mRNA, complete cds blastn 2822 1849 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
3683034 3683034 PRJNA564013_P_NODE_163943_length_339_cov_3.924460_g161093_i0 PRJNA564013 163943 339 3.92446 13.3039194 Physariida 5789 Evosea other_Eukaryota 233 1.07e-56   NTclustered gi|3221|emb|V01159.1| 5791 g161093 i0 87.204 2.36578171091445 211 19 61 8 1 207 5608 5814 Physarum polycephalum gene encoding 5.8S rRNA and 26S rRNA blastn 802 233 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum polycephalum
4378357 4378357 PRJNA564013_P_NODE_31484_length_679_cov_6.182848_g28896_i0 PRJNA564013 31484 679 6.182848 41.98153792 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 1035 0   NTclustered gi|470514366|ref|XM_004352726.1| 1257118 g28896 i0 97.068 0.946980854197349 614 18 90 0 28 641 707 94 Acanthamoeba castellanii str. Neff 3hydroxyisobutyrate dehydrogenase (ACA1_068340), partial mRNA blastn 643 1035 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
6929033 6929033 PRJNA564013_P_NODE_315446_length_216_cov_2.296774_g312594_i0 PRJNA564013 315446 216 2.296774 4.96103184 Cavenderia fasciculata 261658 Evosea other_Eukaryota 100 6.71e-17   NTclustered gi|470252539|ref|XM_004359310.1| 261658 g312594 i0 80.916 3.66203703703704 131 21 60 4 23 151 397 525 Cavenderia fasciculata ADP-ribosylation factor (arfA), partial mRNA blastn 791 100 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata
8200080 8200080 PRJNA564013_P_NODE_135267_length_366_cov_2.032787_g132419_i0 PRJNA564013 135267 366 2.032787 7.44000042 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 577 4.6399999999999986e-160   NTclustered gi|470504894|ref|XM_004348466.1| 1257118 g132419 i0 97.898 1.81967213114754 333 7 91 0 34 366 663 331 Acanthamoeba castellanii str. Neff uncharacterized protein (ACA1_158020), partial mRNA blastn 666 577 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
9475408 9475408 PRJNA564013_P_NODE_120868_length_381_cov_31.265625_g118024_i0 PRJNA564013 120868 381 31.265625 119.12203125 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 388 2.44e-103   NTclustered gi|470391487|ref|XM_004334627.1| 1257118 g118024 i0 99.531 0.63254593175853 213 1 56 0 115 327 213 1 Acanthamoeba castellanii str. Neff ATP synthase subunit epsilon, mitochondrial, putative (ACA1_091720), partial mRNA blastn 241 388 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
9477798 9477798 PRJNA564013_P_NODE_226028_length_282_cov_3.411765_g223177_i0 PRJNA564013 226028 282 3.411765 9.6211773 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 481 2.799999999999999e-131   NTclustered gi|470393851|ref|XM_004334879.1| 1257118 g223177 i0 98.182 0.975177304964539 275 5 98 0 8 282 1 275 Acanthamoeba castellanii str. Neff uncharacterized protein (ACA1_095640), partial mRNA blastn 275 481 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
9478490 9478490 PRJNA564013_P_NODE_264688_length_249_cov_42.356383_g261836_i0 PRJNA564013 264688 249 42.356383 105.46739367 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 110 1.32e-19   NTclustered gi|470428718|ref|XM_004338072.1| 1257118 g261836 i0 100 0.365461847389558 59 0 24 0 168 226 204 146 Acanthamoeba castellanii str. Neff von Willebrand factor type A domain containing protein (ACA1_025530), partial mRNA blastn 91 110 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
9478874 9478874 PRJNA564013_P_NODE_286248_length_234_cov_3.722543_g283396_i0 PRJNA564013 286248 234 3.722543 8.71075062 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 156 1.55e-33   NTclustered gi|470393851|ref|XM_004334879.1| 1257118 g283396 i0 94.949 0.423076923076923 99 5 42 0 1 99 265 363 Acanthamoeba castellanii str. Neff uncharacterized protein (ACA1_095640), partial mRNA blastn 99 156 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
9481087 9481087 PRJNA564013_P_NODE_68708_length_487_cov_1.448357_g65900_i0 PRJNA564013 68708 487 1.448357 7.05349859 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 523 8.369999999999998e-144   NTclustered gi|440265|gb|L27485.1|ACAPROFIA 5755 g65900 i0 99.31 4.25256673511294 290 1 99 1 2 291 30 318 Acanthamoeba castellanii profilin I gene, complete cds blastn 2071 523 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
10755487 10755487 PRJNA564013_P_NODE_325169_length_211_cov_0.866667_g322317_i0 PRJNA564013 325169 211 0.866667 1.82866737 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 340 3.53e-89   NTclustered gi|470395482|ref|XM_004335031.1| 1257118 g322317 i0 95.735 10.3317535545024 211 9 100 0 1 211 3667 3457 Acanthamoeba castellanii str. Neff serine/threonine kinase (ACA1_097510), partial mRNA blastn 2180 340 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
10756911 10756911 PRJNA564013_P_NODE_60449_length_515_cov_4.977974_g57658_i0 PRJNA564013 60449 515 4.977974 25.6365661 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 737 0   NTclustered gi|470421667|ref|XM_004337369.1| 1257118 g57658 i0 95.085 0.90873786407767 468 23 91 0 42 509 124 591 Acanthamoeba castellanii str. Neff mitochondrial import inner membrane translocase subunit tim17 1, putative (ACA1_275780), partial mRNA blastn 468 737 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
12030377 12030377 PRJNA564013_P_NODE_32970_length_666_cov_7.436364_g30347_i0 PRJNA564013 32970 666 7.436364 49.52618424 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 732 0   NTclustered gi|470423693|ref|XM_004337575.1| 1257118 g30347 i0 90.957 0.846846846846847 564 21 85 3 42 605 1 534 Acanthamoeba castellanii str. Neff DJ1 family protein (ACA1_164920), partial mRNA blastn 564 732 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
13301275 13301275 PRJNA564013_P_NODE_133611_length_367_cov_12.849673_g130763_i0 PRJNA564013 133611 367 12.849673 47.15829991 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 477 4.8499999999999985e-130   NTclustered gi|470456670|ref|XM_004341029.1| 1257118 g130763 i0 98.519 0.735694822888283 270 4 74 0 40 309 270 1 Acanthamoeba castellanii str. Neff uncharacterized protein (ACA1_234810), partial mRNA blastn 270 477 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
13305701 13305701 PRJNA564013_P_NODE_347771_length_200_cov_2.805755_g344919_i0 PRJNA564013 347771 200 2.805755 5.61151 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 263 7.369999999999999e-66   NTclustered gi|470375962|ref|XM_004333194.1| 1257118 g344919 i0 90.732 1.025 205 7 100 4 1 200 489 292 Acanthamoeba castellanii str. Neff uncharacterized protein (ACA1_389500), partial mRNA blastn 205 263 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
14579766 14579766 PRJNA564013_P_NODE_310772_length_219_cov_1.455696_g307920_i0 PRJNA564013 310772 219 1.455696 3.18797424 Lobosea sp. Borok 297386 Tubulinea other_Eukaryota 381 2.1799999999999996e-101   NTclustered gi|54306228|gb|AY626163.1| 297386 g307920 i0 98.174 100.849315068493 219 3 100 1 1 219 955 738 Lobosea sp. Borok small subunit ribosomal RNA gene, partial sequence blastn 22086 381 1 Eukaryota Amoebozoa   Tubulinea         Lobosea sp. Borok
15160872 15160872 PRJNA564013_P_NODE_339132_length_204_cov_4.083916_g336280_i0 PRJNA564013 339132 204 4.083916 8.33118864 Physariida 5789 Evosea other_Eukaryota 147 7.939999999999999e-31   NTclustered gi|37515398|emb|AJ584697.1| 159720 g336280 i0 86.567 26.828431372549 134 16 66 2 61 194 9539 9670 Fuligo septica 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2 and 28S rRNA gene, isolate NY-1 blastn 5473 147 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Fuligo Fuligo septica
15852455 15852455 PRJNA564013_P_NODE_246573_length_264_cov_3.778325_g243721_i0 PRJNA564013 246573 264 3.778325 9.974778 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 357 4.5599999999999997e-94   NTclustered gi|470392339|ref|XM_004334715.1| 1257118 g243721 i0 99.49 0.742424242424242 196 1 74 0 69 264 1 196 Acanthamoeba castellanii str. Neff uncharacterized protein (ACA1_092840), partial mRNA blastn 196 357 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
15855257 15855257 PRJNA564013_P_NODE_62453_length_508_cov_2.051454_g59660_i0 PRJNA564013 62453 508 2.051454 10.42138632 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 521 3.1499999999999993e-143   NTclustered gi|470406549|ref|XM_004335910.1| 1257118 g59660 i0 98.969 46.7755905511811 291 3 57 0 194 484 437 147 Acanthamoeba castellanii str. Neff histone L3 H2a, putative (ACA1_364730), partial mRNA blastn 23762 521 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
17130473 17130473 PRJNA564013_P_NODE_72154_length_476_cov_2.896386_g69340_i0 PRJNA564013 72154 476 2.896386 13.78679736 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 503 1.0599999999999998e-137   NTclustered gi|470524465|ref|XM_004356431.1| 1257118 g69340 i0 98.932 0.590336134453782 281 3 59 0 10 290 1235 1515 Acanthamoeba castellanii str. Neff PX domain containing protein (ACA1_171680), partial mRNA blastn 281 503 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
20951900 20951900 PRJNA564013_P_NODE_253257_length_258_cov_15.000000_g250405_i0 PRJNA564013 253257 258 15 38.7 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 305 1.63e-78   NTclustered gi|470509001|ref|XM_004349612.1| 1257118 g250405 i0 99.405 0.651162790697674 168 1 65 0 20 187 448 615 Acanthamoeba castellanii str. Neff ribosomal protein L13, putative (ACA1_315760), partial mRNA blastn 168 305 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
20954818 20954818 PRJNA564013_P_NODE_69777_length_483_cov_8.213270_g66966_i0 PRJNA564013 69777 483 8.21327 39.6700941 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 464 5.099999999999999e-126   NTclustered gi|470512264|ref|XM_004352409.1| 1257118 g66966 i0 93.168 0.886128364389234 322 13 65 1 92 404 3 324 Acanthamoeba castellanii str. Neff tubulin binding cofactor A, putative (ACA1_360010), partial mRNA blastn 428 464 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
22227121 22227121 PRJNA564013_P_NODE_269118_length_246_cov_5.864865_g266266_i0 PRJNA564013 269118 246 5.864865 14.4275679 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 381 2.5e-101   NTclustered gi|498792|emb|X75628.1| 5755 g266266 i0 95.473 76.150406504065 243 3 98 5 7 246 497 260 A.castellanii mRNA for ubiquitin fusion protein blastn 18733 381 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
22227754 22227754 PRJNA564013_P_NODE_302658_length_223_cov_19.160494_g299806_i0 PRJNA564013 302658 223 19.160494 42.72790162 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 268 1.81e-67   NTclustered gi|470441552|ref|XM_004339378.1| 1257118 g299806 i0 97.452 1.08071748878924 157 4 70 0 30 186 627 471 Acanthamoeba castellanii str. Neff ribosomal protein L10, putative (ACA1_061530), partial mRNA blastn 241 268 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
22230256 22230256 PRJNA564013_P_NODE_94558_length_420_cov_1.727019_g91725_i0 PRJNA564013 94558 420 1.727019 7.2534798 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 479 1.5699999999999993e-130   NTclustered gi|470433520|ref|XM_004338539.1| 1257118 g91725 i0 90.186 0.897619047619048 377 24 89 9 1 372 208 576 Acanthamoeba castellanii str. Neff transloconassociated protein subunit beta, putative (ACA1_087560), partial mRNA blastn 377 479 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
23500700 23500700 PRJNA564013_P_NODE_178419_length_326_cov_5.271698_g175569_i0 PRJNA564013 178419 326 5.271698 17.18573548 Entamoeba terrapinae 110771 Evosea other_Eukaryota 128 4.95e-25   NTclustered gi|148923265|gb|EF421319.1| 110771 g175569 i0 94.048 2.55828220858896 84 5 26 0 32 115 728 645 Entamoeba terrapinae strain M tRNA array unit SQCK genomic sequence blastn 834 128 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba terrapinae
24774242 24774242 PRJNA564013_P_NODE_165620_length_337_cov_13.934783_g162770_i0 PRJNA564013 165620 337 13.934783 46.96021871 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 448 3.4699999999999996e-121   NTclustered gi|470430845|ref|XM_004338292.1| 1257118 g162770 i0 96.992 0.789317507418398 266 8 79 0 23 288 323 588 Acanthamoeba castellanii str. Neff uncharacterized protein (ACA1_203710), partial mRNA blastn 266 448 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;