RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA562549" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA562549 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1821570 1821570 PRJNA562549_P_NODE_9022_length_383_cov_2.049689_g8789_i0 PRJNA562549 9022 383 2.049689 7.85030887 Caenorhabditis remanei 31234 Nematoda Nematoda 254 9.33e-63   NTclustered gi|2445394858|ref|XM_053736093.1| 31234 g8789 i0 84.556 67.8067885117493 259 36 67 4 109 365 115 371 Caenorhabditis remanei uncharacterized protein (GCK72_024876), partial mRNA blastn 25970 254 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei
5649471 5649471 PRJNA562549_P_NODE_16545_length_284_cov_1.165919_g16312_i0 PRJNA562549 16545 284 1.165919 3.31120996 Caenorhabditis elegans 6239 Nematoda Nematoda 110 1.53e-19   NTclustered gi|687866011|emb|LK928302.1| 6239 g16312 i0 92.208 43.3450704225352 77 6 27 0 1 77 2471 2395 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_contig0000180 blastn 12310 110 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
12024826 12024826 PRJNA562549_P_NODE_26170_length_230_cov_1.100592_g25937_i0 PRJNA562549 26170 230 1.100592 2.5313616 Strongyloides ratti 34506 Nematoda Nematoda 231 2.4599999999999996e-56   NTclustered gi|1376136641|ref|XM_024648415.1| 34506 g25937 i0 85.088 100.295652173913 228 32 99 2 3 229 160 386 Strongyloides ratti Actin, alpha cardiac muscle 1 (SRAE_1000145800), partial mRNA blastn 23068 231 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;