RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA562549" and tax_phylum = "Chlorophyta"

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tax_superkingdom 1

tax_phylum 1

  • Chlorophyta · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA562549 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9474302 9474302 PRJNA562549_P_NODE_23908_length_239_cov_4.887640_g23675_i0 PRJNA562549 23908 239 4.88764 11.6814596 Chlamydomonas reinhardtii 3055 Plants Plants 93.5 1.27e-14   NTclustered gi|2082237973|ref|XM_043059091.1| 3055 g23675 i0 90.141 3.8744769874477 71 7 30 0 58 128 160 230 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_01g072027v5), partial mRNA blastn 926 93.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
14574672 14574672 PRJNA562549_P_NODE_17732_length_274_cov_4.347418_g17499_i0 PRJNA562549 17732 274 4.347418 11.91192532 Micromonas commoda 296587 Plants Plants 52.8 0.025   NTclustered gi|255089373|ref|XM_002506563.1| 296587 g17499 i0 96.774 0.113138686131387 31 1 11 0 205 235 2894 2864 Micromonas commoda predicted protein partial mRNA blastn 31 52.8 1 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Mamiellaceae Micromonas Micromonas commoda
14574802 14574802 PRJNA562549_P_NODE_32572_length_209_cov_0.878378_g32339_i0 PRJNA562549 32572 209 0.878378 1.83581002 Chloropicon roscoffensis 1461544 Plants Plants 171 4.849999999999999e-38   NTclustered gi|2863410610|gb|CP145446.1| 1461544 g32339 i0 84.091 49.0382775119617 176 28 84 0 1 176 251857 251682 Chloropicon roscoffensis strain CCMP1998 chromosome 6 blastn 10249 171 1 Eukaryota   Viridiplantae Chlorophyta Chloropicophyceae Chloropicales Chloropicaceae Chloropicon Chloropicon roscoffensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;