RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA562549" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA562549 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17123512 17123512 PRJNA562549_P_NODE_34654_length_205_cov_1.708333_g34421_i0 PRJNA562549 34654 205 1.708333 3.50208265 Phaeodactylum tricornutum 2850 SAR_Eukaryotes SAR_Eukaryotes 161 2.8499999999999995e-35   NTclustered gi|657012369|gb|KF302532.1| 2850 g34421 i0 86.395 0.717073170731707 147 20 72 0 59 205 226 80 Phaeodactylum tricornutum clone C80 40S ribosomal protein mRNA, complete cds blastn 147 161 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum
22222679 22222679 PRJNA562549_P_NODE_13478_length_313_cov_1.896825_g13245_i0 PRJNA562549 13478 313 1.896825 5.93706225 Phaeodactylum tricornutum 2850 SAR_Eukaryotes SAR_Eukaryotes 265 3.45e-66   NTclustered gi|657012511|gb|KF302595.1| 2850 g13245 i0 89.524 6.38019169329073 210 21 67 1 105 313 293 84 Phaeodactylum tricornutum clone C854 ubiquitin-ribosomal protein fusion S27a mRNA, partial cds blastn 1997 265 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum
22222686 22222686 PRJNA562549_P_NODE_14138_length_306_cov_1.102041_g13905_i0 PRJNA562549 14138 306 1.102041 3.37224546 Phaeodactylum tricornutum 2850 SAR_Eukaryotes SAR_Eukaryotes 298 3.32e-76   NTclustered gi|657012465|gb|KF302574.1| 2850 g13905 i0 87.308 12.9705882352941 260 33 85 0 47 306 1 260 Phaeodactylum tricornutum clone C567 ribosomal protein mRNA, partial cds blastn 3969 298 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;