RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA562549" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA562549 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6923679 6923679 PRJNA562549_P_NODE_13486_length_313_cov_1.730159_g13253_i0 PRJNA562549 13486 313 1.730159 5.41539767 Plasmodium falciparum 5833 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.029   NTclustered gi|124806941|ref|XM_001350835.1| 36329 g13253 i0 100 0.0894568690095847 28 0 9 0 139 166 1770 1743 Plasmodium falciparum 3D7 conserved Plasmodium protein, unknown function (PF3D7_1248700), partial mRNA blastn 28 52.8 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum
8198729 8198729 PRJNA562549_P_NODE_4867_length_520_cov_2.921569_g4646_i0 PRJNA562549 4867 520 2.921569 15.1921588 Cardiosporidium cionae 476202 SAR_Eukaryotes SAR_Eukaryotes 320 1.2699999999999998e-82   NTclustered gi|1534888114|gb|MK212222.1| 476202 g4646 i0 77.969 1.23076923076923 522 108 99 7 1 517 265 784 Cardiosporidium cionae isolate Cardio31 iron ABC transporter substrate-binding protein mRNA, complete cds blastn 640 320 1 Eukaryota Sar   Apicomplexa Aconoidasida Nephromycida   Cardiosporidium Cardiosporidium cionae
10750247 10750247 PRJNA562549_P_NODE_9489_length_374_cov_1.153355_g9256_i0 PRJNA562549 9489 374 1.153355 4.3135477 Neospora caninum 29176 SAR_Eukaryotes SAR_Eukaryotes 239 2.55e-58   NTclustered gi|401402052|ref|XM_003881109.1| 572307 g9256 i0 81.597 63.9946524064171 288 53 77 0 87 374 379 92 Neospora caninum Liverpool putative ubiquitin / ribosomal protein CEP52 fusion protein (NCLIV_042000), partial mRNA blastn 23934 239 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Neospora Neospora caninum
24772001 24772001 PRJNA562549_P_NODE_29260_length_218_cov_1.738854_g29027_i0 PRJNA562549 29260 218 1.738854 3.79070172 Plasmodium chabaudi 5825 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.019   NTclustered gi|1027958315|ref|XM_016799264.1| 31271 g29027 i0 100 0.128440366972477 28 0 13 0 136 163 6417 6390 Plasmodium chabaudi chabaudi conserved Plasmodium protein, unknown function (PCHAS_1332500), partial mRNA blastn 28 52.8 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium chabaudi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;