RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA562549" and tax_clade = "Amoebozoa"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 4 ✖

bioproject 1

  • PRJNA562549 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6234431 6234431 PRJNA562549_P_NODE_28145_length_222_cov_1.614907_g27912_i0 PRJNA562549 28145 222 1.614907 3.58509354 Eumycetozoa 142796 Evosea other_Eukaryota 80.5 9.03e-11   NTclustered gi|330842002|ref|XM_003292928.1| 5786 g27912 i0 87.5 7.55855855855856 72 6 32 1 9 80 123 55 Dictyostelium purpureum uncharacterized protein (DICPUDRAFT_95723), partial mRNA blastn 1678 80.5 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
11334068 11334068 PRJNA562549_P_NODE_629_length_1224_cov_3.446260_g576_i0 PRJNA562549 629 1224 3.44626 42.1822224 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 856 0   NTclustered gi|511083902|dbj|AK419160.1| 5759 g576 i0 80.711 91.8717320261438 1125 195 91 20 47 1160 29 1142 Entamoeba histolytica cDNA clone: Xeh-003B20, actin, complete cds, strain: HM-1:IMSS blastn 112451 856 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba histolytica
18397786 18397786 PRJNA562549_P_NODE_7135_length_431_cov_2.856757_g6902_i0 PRJNA562549 7135 431 2.856757 12.31262267 Entamoeba dispar 46681 Evosea other_Eukaryota 259 2.28e-64   NTclustered gi|167393182|ref|XM_001740406.1| 370354 g6902 i0 77.829 53.2412993039443 433 86 100 7 1 431 701 277 Entamoeba dispar SAW760 elongation factor 1-alpha (EDI_196620), partial mRNA blastn 22947 259 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba dispar
20947942 20947942 PRJNA562549_P_NODE_34817_length_205_cov_0.902778_g34584_i0 PRJNA562549 34817 205 0.902778 1.8506949 Dictyostelium purpureum 5786 Evosea other_Eukaryota 228 2.769999999999999e-55   NTclustered gi|330791385|ref|XM_003283726.1| 5786 g34584 i0 87.374 70.8048780487805 198 25 97 0 5 202 411 608 Dictyostelium purpureum uncharacterized protein (DICPUDRAFT_91170), partial mRNA blastn 14515 228 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;