RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA561212" and tax_superkingdom = "Archaea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

  • Archaea · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA561212 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13299423 13299423 PRJNA561212_P_NODE_17451_length_272_cov_1.140704_g17240_i0 PRJNA561212 17451 272 1.140704 3.10271488 Promethearchaeota archaeon 2053489 Archaea Archaea 52.8 0.025   NTclustered gi|2107767831|gb|CP070831.1| 2053489 g17240 i0 100 0.102941176470588 28 0 10 0 189 216 2348521 2348548 MAG: Promethearchaeota archaeon isolate bin108 chromosome blastn 28 52.8 1 Archaea   Promethearchaeati Promethearchaeota         Promethearchaeota archaeon
18397263 18397263 PRJNA561212_P_NODE_19255_length_259_cov_1.209677_g19044_i0 PRJNA561212 19255 259 1.209677 3.13306343 Natrialba magadii 13769 Archaea Archaea 52.8 0.024   NTclustered gi|289529249|gb|CP001932.1| 547559 g19044 i0 100 0.108108108108108 28 0 11 0 24 51 3672109 3672082 Natrialba magadii ATCC 43099, complete sequence blastn 28 52.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natrialba Natrialba magadii
20947434 20947434 PRJNA561212_P_NODE_13977_length_299_cov_1.274336_g13766_i0 PRJNA561212 13977 299 1.274336 3.81026464 Methanolobus sp. ZRKC2 3125783 Archaea Archaea 78.7 4.59e-10   NTclustered gi|2708450131|gb|CP146980.1| 3125783 g13766 i0 90.164 0.204013377926421 61 4 20 2 240 299 639879 639820 Methanolobus sp. ZRKC2 chromosome, complete genome blastn 61 78.7 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanolobus Methanolobus sp. ZRKC2
22222584 22222584 PRJNA561212_P_NODE_6038_length_449_cov_1.178191_g5827_i0 PRJNA561212 6038 449 1.178191 5.29007759 uncultured archaeon 115547 Archaea Archaea 392 2.2599999999999998e-104   NTclustered gi|1032564179|gb|KX029975.1| 115547 g5827 i0 94.882 58.9420935412027 254 8 57 2 188 441 250 2 Uncultured archaeon clone A_OTU_499 16S ribosomal RNA gene, partial sequence blastn 26465 392 1 Archaea               uncultured archaeon

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;