RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA561212" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA561212 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6234263 6234263 PRJNA561212_P_NODE_16845_length_276_cov_1.458128_g16634_i0 PRJNA561212 16845 276 1.458128 4.02443328 root 1 Root_unresolved Root_unresolved 279 1.07e-70   NTclustered gi|470477500|ref|NR_076387.1| 19 g16634 i0 86.538 158.898550724638 260 27 93 7 10 267 1983 1730 Pelobacter carbinolicus strain Gra Bd 1 23S ribosomal RNA gene, complete sequence blastn 43856 281 0.99288256227758 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Syntrophotaleaceae Syntrophotalea Syntrophotalea carbinolica
6234275 6234275 PRJNA561212_P_NODE_3845_length_564_cov_0.881874_g3638_i0 PRJNA561212 3845 564 0.881874 4.97376936 Nitratidesulfovibrio 2802295 Bacteria Bacteria 989 0   NTclustered gi|2791413552|dbj|AP036014.1| 2009266 g3638 i0 99.449 277 544 3 96 0 10 553 226840 226297 Nitratidesulfovibrio sp. HK-II DNA, complete genome blastn 156228 994 0.994969818913481 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Nitratidesulfovibrio Nitratidesulfovibrio sp. HK-II
7508647 7508647 PRJNA561212_P_NODE_14886_length_291_cov_1.279817_g14675_i0 PRJNA561212 14886 291 1.279817 3.72426747 Desulfocurvibacter 2582840 Bacteria Bacteria 283 8.78e-72   NTclustered gi|470489697|ref|NR_076945.1| 873 g14675 i0 85.348 87.9209621993127 273 40 94 0 10 282 496 224 Desulfovibrio africanus strain Walvis Bay 23S ribosomal RNA gene, complete sequence blastn 25585 283 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfocurvibacter Desulfocurvibacter africanus
19671822 19671822 PRJNA561212_P_NODE_15556_length_286_cov_1.056338_g15345_i0 PRJNA561212 15556 286 1.056338 3.02112668 Nitratidesulfovibrio sp. HK-II 2009266 Bacteria Bacteria 496 1.02e-135   NTclustered gi|2791413552|dbj|AP036014.1| 2009266 g15345 i0 100 171.195804195804 268 0 94 0 10 277 225787 225520 Nitratidesulfovibrio sp. HK-II DNA, complete genome blastn 48962 496 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Nitratidesulfovibrio Nitratidesulfovibrio sp. HK-II
23497782 23497782 PRJNA561212_P_NODE_22199_length_249_cov_0.886364_g21988_i0 PRJNA561212 22199 249 0.886364 2.20704636 Nitratidesulfovibrio sp. HK-II 2009266 Bacteria Bacteria 424 4.15e-114   NTclustered gi|2791413552|dbj|AP036014.1| 2009266 g21988 i0 99.569 335.534136546185 232 1 93 0 9 240 227377 227608 Nitratidesulfovibrio sp. HK-II DNA, complete genome blastn 83548 424 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Nitratidesulfovibrio Nitratidesulfovibrio sp. HK-II

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;