RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA561212" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 8 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA561212 · 8 ✖

analysis 1

  • blastn · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
545247 545247 PRJNA561212_P_NODE_14641_length_293_cov_1.227273_g14430_i0 PRJNA561212 14641 293 1.227273 3.59590989 Stenostomum sthenum 1611831 Platyhelminthes Platyhelminthes 442 1.3799999999999993e-119   NTclustered gi|1215837197|ref|NC_035256.1| 1611831 g14430 i0 94.718 7.7098976109215 284 15 97 0 1 284 8284 8567 Stenostomum sthenum mitochondrion, complete genome blastn 2259 442 1 Eukaryota Opisthokonta Metazoa Platyhelminthes     Stenostomidae Stenostomum Stenostomum sthenum
4958797 4958797 PRJNA561212_P_NODE_16024_length_282_cov_1.421053_g15813_i0 PRJNA561212 16024 282 1.421053 4.00736946 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 56.5 0.002   NTclustered gi|2318767182|ref|XM_051213840.1| 6185 g15813 i0 90.698 0.542553191489362 43 3 15 1 35 77 1664 1705 Schistosoma haematobium Transcriptional activator gli3, variant 2 (GLI3_2), partial mRNA blastn 153 56.5 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma haematobium
9473797 9473797 PRJNA561212_P_NODE_10888_length_335_cov_3.217557_g10677_i0 PRJNA561212 10888 335 3.217557 10.77881595 Stenostomum leucops 52061 Platyhelminthes Platyhelminthes 542 1.54e-149   NTclustered gi|28273263|gb|AY157151.1| 52061 g10677 i0 97.778 61.5522388059701 315 5 93 2 14 326 8 322 Stenostomum leucops 28S large subunit ribosomal RNA gene, partial sequence blastn 20620 542 1 Eukaryota Opisthokonta Metazoa Platyhelminthes     Stenostomidae Stenostomum Stenostomum leucops
9473899 9473899 PRJNA561212_P_NODE_17148_length_274_cov_1.194030_g16937_i0 PRJNA561212 17148 274 1.19403 3.2716422 Spirometra erinaceieuropaei 99802 Platyhelminthes Platyhelminthes 56.5 0.002   NTclustered gi|690485441|emb|LN029116.1| 99802 g16937 i0 100 0.109489051094891 30 0 11 0 196 225 6506 6477 Spirometra erinaceieuropaei genome assembly S_erinaceieuropaei ,scaffold SPER_scaffold0028556 blastn 30 56.5 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Diphyllobothriidea Diphyllobothriidae Spirometra Spirometra erinaceieuropaei
18397212 18397212 PRJNA561212_P_NODE_15715_length_284_cov_2.052133_g15504_i0 PRJNA561212 15715 284 2.052133 5.82805772 Spirometra erinaceieuropaei 99802 Platyhelminthes Platyhelminthes 56.5 0.002   NTclustered gi|690593240|emb|LN145943.1| 99802 g15504 i0 100 0.658450704225352 30 0 11 0 244 273 1756 1727 Spirometra erinaceieuropaei genome assembly S_erinaceieuropaei ,scaffold SPER_scaffold0133009 blastn 187 56.5 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Diphyllobothriidea Diphyllobothriidae Spirometra Spirometra erinaceieuropaei
20257224 20257224 PRJNA561212_P_NODE_5856_length_456_cov_3.496084_g5645_i0 PRJNA561212 5856 456 3.496084 15.94214304 Monogenea 37945 Platyhelminthes Platyhelminthes 91.6 9.37e-14   NTclustered gi|1346678826|gb|MG973075.1| 321991 g5645 i0 96.364 11.2719298245614 55 2 12 0 393 447 7056 7002 Cichlidogyrus halli isolate C_ha small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 5140 91.6 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Monogenea Dactylogyridea Ancyrocephalidae Cichlidogyrus Cichlidogyrus halli
21532731 21532731 PRJNA561212_P_NODE_9537_length_357_cov_0.802817_g9326_i0 PRJNA561212 9537 357 0.802817 2.86605669 Metazoa 33208 Platyhelminthes Platyhelminthes 54.7 0.009   NTclustered gi|1373848788|ref|XM_024490771.1| 6210 g9326 i0 100 0.798319327731092 29 0 8 0 326 354 1277 1305 Echinococcus granulosus Transcription factor Sox-19a (EGR_01522), partial mRNA blastn 285 54.7 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Cyclophyllidea Taeniidae Echinococcus Echinococcus granulosus
24771528 24771528 PRJNA561212_P_NODE_12280_length_317_cov_1.520492_g12069_i0 PRJNA561212 12280 317 1.520492 4.81995964 Spirometra erinaceieuropaei 99802 Platyhelminthes Platyhelminthes 52.8 0.03   NTclustered gi|690946365|emb|LN456831.1| 99802 g12069 i0 96.774 0.0977917981072555 31 1 10 0 210 240 39 9 Spirometra erinaceieuropaei genome assembly S_erinaceieuropaei ,scaffold SPER_contig0205442 blastn 31 52.8 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Diphyllobothriidea Diphyllobothriidae Spirometra Spirometra erinaceieuropaei

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;