RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA561212" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA561212 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6923546 6923546 PRJNA561212_P_NODE_4266_length_536_cov_1.412527_g4057_i0 PRJNA561212 4266 536 1.412527 7.57114472 Heterodera glycines 51029 Nematoda Nematoda 265 6.21e-66   NTclustered gi|3676825|gb|AF092449.1|AF092449 51029 g4057 i0 84.364 0.675373134328358 275 38 67 3 220 490 653 380 Heterodera glycines mucin-like protein (svg-1) mRNA, complete cds blastn 362 265 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heteroderidae Heterodera Heterodera glycines
15158754 15158754 PRJNA561212_P_NODE_4572_length_516_cov_4.198646_g4363_i0 PRJNA561212 4572 516 4.198646 21.66501336 Pristionchus 54125 Nematoda Nematoda 191 1.0299999999999998e-43   NTclustered gi|150982121|gb|EF634649.1| 358041 g4363 i0 85.955 13.6627906976744 178 25 34 0 277 454 204 27 Pristionchus uniformis large subunit ribosomal protein 27a (rpl-27a) mRNA, partial cds blastn 7050 191 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus uniformis
19672068 19672068 PRJNA561212_P_NODE_8416_length_378_cov_2.334426_g8205_i0 PRJNA561212 8416 378 2.334426 8.82413028 Ecumenicus sp. 85G11 2592549 Nematoda Nematoda 588 2.2199999999999993e-163   NTclustered gi|1702224030|gb|MK292127.1| 2592549 g8205 i0 96.359 88.8412698412698 357 13 94 0 10 366 3044 3400 Ecumenicus sp. 85G11 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 33582 588 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Dorylaimida Qudsianematidae Ecumenicus Ecumenicus sp. 85G11
23497790 23497790 PRJNA561212_P_NODE_2299_length_722_cov_1.949153_g2101_i0 PRJNA561212 2299 722 1.949153 14.07288466 Caenorhabditis remanei 31234 Nematoda Nematoda 182 8.83e-41   NTclustered gi|2445362687|ref|XM_053726842.1| 31234 g2101 i0 85 26.0886426592798 180 26 25 1 523 701 1451 1272 Caenorhabditis remanei uncharacterized protein (GCK72_008464), partial mRNA blastn 18836 182 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;