RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

22 rows where analysis = "blastn", bioproject = "PRJNA561212" and tax_phylum = "Ciliophora"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 22 ✖

tax_clade 1

bioproject 1

  • PRJNA561212 · 22 ✖

analysis 1

  • blastn · 22 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
545440 545440 PRJNA561212_P_NODE_341_length_1643_cov_14.349045_g267_i0 PRJNA561212 341 1643 14.349045 235.75480935 Tetrahymena thermophila 5911 SAR_Eukaryotes SAR_Eukaryotes 56.5 0.013   NTclustered gi|829195282|ref|XM_001029383.2| 312017 g267 i0 100 0.0359099208764455 30 0 2 0 1115 1144 6026 5997 Tetrahymena thermophila SB210 SNF2 family amine-terminal protein partial mRNA blastn 59 56.5 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
1821086 1821086 PRJNA561212_P_NODE_21722_length_250_cov_0.881356_g21511_i0 PRJNA561212 21722 250 0.881356 2.20339 Tetrahymena pyriformis 5908 SAR_Eukaryotes SAR_Eukaryotes 135 2.1900000000000003e-27   NTclustered gi|8050575|gb|AF213665.1|AF213665 5908 g21511 i0 84.559 0.544 136 21 54 0 9 144 1411 1276 Tetrahymena pyriformis elongation factor 2 (EF2) gene, partial cds blastn 136 135 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena pyriformis
1821269 1821269 PRJNA561212_P_NODE_9482_length_358_cov_0.754386_g9271_i0 PRJNA561212 9482 358 0.754386 2.70070188 Tetrahymena thermophila 5911 SAR_Eukaryotes SAR_Eukaryotes 121 9.16e-23   NTclustered gi|229593638|ref|XM_001027526.3| 312017 g9271 i0 73.088 1.75977653631285 353 89 98 6 9 358 913 564 Tetrahymena thermophila SB210 Ndc1 protein partial mRNA blastn 630 121 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
2406092 2406092 PRJNA561212_P_NODE_16522_length_279_cov_1.048544_g16311_i0 PRJNA561212 16522 279 1.048544 2.92543776 Tetrahymena 5890 SAR_Eukaryotes SAR_Eukaryotes 436 6.069999999999999e-118   NTclustered gi|822092996|gb|KP313320.1| 5911 g16311 i0 95.911 91.7777777777778 269 11 96 0 1 269 725 457 Tetrahymena thermophila isolate 19869-1 alpha-tubulin (ATU1) gene, partial cds; macronuclear blastn 25606 436 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
3682022 3682022 PRJNA561212_P_NODE_4683_length_511_cov_2.899543_g4474_i0 PRJNA561212 4683 511 2.899543 14.81666473 Vorticella 60849 SAR_Eukaryotes SAR_Eukaryotes 902 0   NTclustered gi|363412153|gb|JN120227.1| 60850 g4474 i0 99.595 96.6829745596869 494 2 97 0 9 502 440 933 Vorticella convallaria isolate 96Vorsp16 18S ribosomal RNA gene, partial sequence blastn 49405 902 1 Eukaryota Sar   Ciliophora Oligohymenophorea Sessilida Vorticellidae Vorticella Vorticella convallaria
5649327 5649327 PRJNA561212_P_NODE_5025_length_493_cov_5.695238_g4814_i0 PRJNA561212 5025 493 5.695238 28.07752334 Tetrahymena chironomi 3034767 SAR_Eukaryotes SAR_Eukaryotes 856 0   NTclustered gi|2459327221|gb|OQ626840.1| 3034767 g4814 i0 99.158 88.3022312373225 475 4 96 0 10 484 951 477 Tetrahymena chironomi isolate LLH20220320 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 43533 856 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena chironomi
6234253 6234253 PRJNA561212_P_NODE_10405_length_342_cov_1.687732_g10194_i0 PRJNA561212 10405 342 1.687732 5.77204344 Chilodonella 151076 SAR_Eukaryotes SAR_Eukaryotes 595 1.1899999999999999e-165   NTclustered gi|1389430796|gb|MH341624.1| 1654720 g10194 i0 99.692 90.4853801169591 325 1 95 0 9 333 12 336 Chilodonella piscicola strain C.piscicola SC small subunit ribosomal RNA gene, partial sequence blastn 30946 595 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella piscicola
6923294 6923294 PRJNA561212_P_NODE_12986_length_309_cov_6.072034_g12775_i0 PRJNA561212 12986 309 6.072034 18.76258506 Planilamina ovata 2684848 SAR_Eukaryotes SAR_Eukaryotes 292 1.5599999999999999e-74   NTclustered gi|1784308423|gb|MN830171.1| 2684848 g12775 i0 86.517 54.7766990291262 267 34 86 2 14 279 149 414 Planilamina ovata isolate LJ-II-20170502 large subunit ribosomal RNA gene, partial sequence blastn 16926 292 1 Eukaryota Sar   Ciliophora Phyllopharyngea Dysteriida Kyaroikeidae Planilamina Planilamina ovata
10749794 10749794 PRJNA561212_P_NODE_3169_length_618_cov_1.917431_g2964_i0 PRJNA561212 3169 618 1.917431 11.84972358 Chilodonella piscicola 1654720 SAR_Eukaryotes SAR_Eukaryotes 915 0   NTclustered gi|1389430804|gb|MH341632.1| 1654720 g2964 i0 94.176 65.173139158576 601 33 97 2 10 609 609 10 Chilodonella piscicola strain SC large subunit ribosomal RNA gene, partial sequence blastn 40277 915 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella piscicola
13299411 13299411 PRJNA561212_P_NODE_16891_length_276_cov_1.108374_g16680_i0 PRJNA561212 16891 276 1.108374 3.05911224 Tetrahymena acanthophora 2704174 SAR_Eukaryotes SAR_Eukaryotes 427 3.61e-115   NTclustered gi|1802471988|gb|MN994476.1| 2704174 g16680 i0 96.525 55.3913043478261 259 8 93 1 10 267 115 373 Tetrahymena acanthophora isolate ZP61 large subunit ribosomal RNA gene, partial sequence; mitochondrial blastn 15288 427 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena acanthophora
13299453 13299453 PRJNA561212_P_NODE_19131_length_260_cov_1.272727_g18920_i0 PRJNA561212 19131 260 1.272727 3.3090902 Stylonychia mytilus 5950 SAR_Eukaryotes SAR_Eukaryotes 305 1.65e-78   NTclustered gi|6007455|gb|AF188162.1|AF188162 5950 g18920 i0 88.843 87.6846153846154 242 27 93 0 10 251 1100 859 Stylonychia mytilus beta tubulin gene, complete cds blastn 22798 305 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Stylonychia Stylonychia mytilus
14574481 14574481 PRJNA561212_P_NODE_2672_length_671_cov_13.138796_g2335_i1 PRJNA561212 2672 671 13.138796 88.16132116 Pseudovorticella sp. FG-2015 1607895 SAR_Eukaryotes SAR_Eukaryotes 1123 0   NTclustered gi|759083559|gb|KM222176.1| 1607895 g2335 i1 98.145 85.7868852459016 647 6 96 4 11 654 644 1 Pseudovorticella sp. FG-2015 voucher SZ2010032108 large subunit ribosomal RNA gene, partial sequence blastn 57563 1123 1 Eukaryota Sar   Ciliophora Oligohymenophorea Sessilida Vorticellidae Pseudovorticella Pseudovorticella sp. FG-2015
17708668 17708668 PRJNA561212_P_NODE_7814_length_392_cov_1.789969_g7603_i0 PRJNA561212 7814 392 1.789969 7.01667848 root 1 Root_unresolved Root_unresolved 682 0   NTclustered gi|1621572405|gb|MH051920.1| 5893 g7603 i0 98.95 97.1989795918367 381 4 97 0 6 386 992 612 Tetrahymena borealis strain 1630/5A small subunit ribosomal RNA gene, partial sequence blastn 38102 688 0.991279069767442 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena borealis
18397148 18397148 PRJNA561212_P_NODE_12215_length_318_cov_1.204082_g12004_i0 PRJNA561212 12215 318 1.204082 3.82898076 Philasterides dicentrarchi 282688 SAR_Eukaryotes SAR_Eukaryotes 165 3.67e-36   NTclustered gi|49616744|gb|AY643504.1| 282688 g12004 i0 85.987 2.15723270440252 157 18 49 4 35 189 251 97 Philasterides dicentrarchi 26S ribosomal RNA gene, partial sequence blastn 686 165 1 Eukaryota Sar   Ciliophora Oligohymenophorea Philasterida Philasteridae Philasterides Philasterides dicentrarchi
18397396 18397396 PRJNA561212_P_NODE_3955_length_557_cov_1.590909_g3748_i0 PRJNA561212 3955 557 1.590909 8.86136313 Chilodonella hexasticha 1938391 SAR_Eukaryotes SAR_Eukaryotes 918 0   NTclustered gi|1389430805|gb|MH341633.1| 1938391 g3748 i0 96.898 65.7271095152603 548 17 98 0 1 548 1785 2332 Chilodonella hexasticha strain C.hexasticha AS large subunit ribosomal RNA gene, partial sequence blastn 36610 918 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella hexasticha
20257218 20257218 PRJNA561212_P_NODE_2696_length_669_cov_3.736577_g2491_i0 PRJNA561212 2696 669 3.736577 24.99770013 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 331 7.64e-86   NTclustered gi|161789|gb|M87504.1|TETHIS32A 5911 g2491 i0 81.327 58.9955156950673 407 76 61 0 37 443 210 616 Tetrahymena thermophila histone H3 (HHT2) gene, complete cds blastn 39468 333 0.993993993993994 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
20947554 20947554 PRJNA561212_P_NODE_21857_length_250_cov_0.881356_g21646_i0 PRJNA561212 21857 250 0.881356 2.20339 Philasterides dicentrarchi 282688 SAR_Eukaryotes SAR_Eukaryotes 167 7.75e-37   NTclustered gi|1574038607|gb|MH427332.1| 282688 g21646 i0 80.841 1.78 214 39 85 2 31 242 424 637 Philasterides dicentrarchi cytochrome c1 mRNA, complete cds blastn 445 167 1 Eukaryota Sar   Ciliophora Oligohymenophorea Philasterida Philasteridae Philasterides Philasterides dicentrarchi
20947600 20947600 PRJNA561212_P_NODE_24937_length_244_cov_0.912281_g24726_i0 PRJNA561212 24937 244 0.912281 2.22596564 Tetrahymena thermophila 5911 SAR_Eukaryotes SAR_Eukaryotes 204 5.74e-48   NTclustered gi|829166462|ref|XM_001014441.3| 312017 g24726 i0 86.082 0.795081967213115 194 22 79 5 43 234 1 191 Tetrahymena thermophila SB210 40S ribosomal protein S0 partial mRNA blastn 194 204 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
21532729 21532729 PRJNA561212_P_NODE_6657_length_427_cov_1.596045_g6446_i0 PRJNA561212 6657 427 1.596045 6.81511215 root 1 Root_unresolved Root_unresolved 728 0   NTclustered gi|345541658|gb|JN547815.1| 5911 g6446 i0 98.778 79.6651053864169 409 5 96 0 10 418 3401 3809 Tetrahymena thermophila strain ATCC 30382 18S ribosomal RNA gene, partial sequence; and internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 26S ribosomal RNA gene, complete sequence blastn 34017 728 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
23497818 23497818 PRJNA561212_P_NODE_2539_length_688_cov_13.287805_g2335_i0 PRJNA561212 2539 688 13.287805 91.4200984 Vorticella sp. 4 JG-2011 1295638 SAR_Eukaryotes SAR_Eukaryotes 1051 0   NTclustered gi|512134943|gb|JX178902.1| 1295638 g2335 i0 94.94 89.6831395348837 672 33 98 1 8 679 1672 1002 Vorticella sp. 4 JG-2011 clone 2 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 61702 1051 1 Eukaryota Sar   Ciliophora Oligohymenophorea Sessilida Vorticellidae Vorticella Vorticella sp. 4 JG-2011
23497944 23497944 PRJNA561212_P_NODE_9379_length_359_cov_8.020979_g9168_i0 PRJNA561212 9379 359 8.020979 28.79531461 Tetrahymena pyriformis 5908 SAR_Eukaryotes SAR_Eukaryotes 610 4.47e-170   NTclustered gi|10782|emb|X54004.1| 5908 g9168 i0 99.407 55.7047353760446 337 1 94 1 14 350 3284 2949 Tetrahymena pyriformis gene for 26S large subunit ribosomal RNA blastn 19998 610 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena pyriformis
25357020 25357020 PRJNA561212_P_NODE_16000_length_282_cov_1.976077_g15789_i0 PRJNA561212 16000 282 1.976077 5.57253714 Chilodonella 151076 SAR_Eukaryotes SAR_Eukaryotes 481 2.799999999999999e-131   NTclustered gi|13194559|gb|AF300281.1|AF300281 151077 g15789 i0 99.248 91.5212765957447 266 2 94 0 8 273 1260 1525 Chilodonella uncinata clone 1 18S small subunit ribosomal RNA gene, partial sequence blastn 25809 481 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella uncinata

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;