RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA561212" and tax_phylum = "Chytridiomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA561212 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5649221 5649221 PRJNA561212_P_NODE_22105_length_249_cov_1.335227_g21894_i0 PRJNA561212 22105 249 1.335227 3.32471523 Polychytrium aggregatum 110093 Fungi Fungi 233 7.5e-57   NTclustered gi|2432168590|ref|XM_053112370.1| 110093 g21894 i0 85.043 33.1164658634538 234 29 93 6 10 240 2288 2058 Polychytrium aggregatum P-loop containing nucleoside triphosphate hydrolase protein (BJ171DRAFT_519711), mRNA blastn 8246 233 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
9473806 9473806 PRJNA561212_P_NODE_11328_length_329_cov_1.687500_g11117_i0 PRJNA561212 11328 329 1.6875 5.551875 Polychytrium aggregatum 110093 Fungi Fungi 180 1.36e-40   NTclustered gi|2432158676|ref|XM_053113190.1| 110093 g11117 i0 80.08 7.86626139817629 251 42 75 8 41 287 325 79 Polychytrium aggregatum ribosomal protein S25 component of cytosolic 80S ribosome and 40S small subunit (BJ171DRAFT_559057), partial mRNA blastn 2588 180 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
23497904 23497904 PRJNA561212_P_NODE_6579_length_429_cov_3.176966_g6368_i0 PRJNA561212 6579 429 3.176966 13.62918414 Polychytrium aggregatum 110093 Fungi Fungi 329 1.71e-85   NTclustered gi|2432149348|ref|XM_053111166.1| 110093 g6368 i0 89.057 84.5734265734266 265 29 62 0 10 274 470 206 Polychytrium aggregatum ribosomal protein S19-domain-containing protein (BJ171DRAFT_506928), mRNA blastn 36282 329 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
24771553 24771553 PRJNA561212_P_NODE_14240_length_297_cov_1.004464_g14029_i0 PRJNA561212 14240 297 1.004464 2.98325808 Polychytrium aggregatum 110093 Fungi Fungi 257 5.45e-64   NTclustered gi|2432148816|ref|XM_053111139.1| 110093 g14029 i0 83.158 87.4141414141414 285 45 95 3 6 288 593 310 Polychytrium aggregatum 14-3-3 protein (BJ171DRAFT_506605), mRNA blastn 25962 257 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;