RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA561212" and tax_phylum = "Cercozoa"

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tax_superkingdom 1

tax_phylum 1

  • Cercozoa · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA561212 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4372809 4372809 PRJNA561212_P_NODE_18924_length_261_cov_1.930851_g18713_i0 PRJNA561212 18924 261 1.930851 5.03952111 Cryothecomonas sp. APCC MC5-1Cryo 741088 SAR_Eukaryotes SAR_Eukaryotes 178 3.759999999999999e-40   NTclustered gi|290760480|gb|GQ144683.1| 741088 g18713 i0 92.063 40.4099616858238 126 10 48 0 127 252 2114 1989 Cryothecomonas sp. APCC MC5-1Cryo large subunit ribosomal RNA gene, partial sequence blastn 10547 178 1 Eukaryota Sar   Cercozoa Thecofilosea Cryomonadida Protaspidae Cryothecomonas Cryothecomonas sp. APCC MC5-1Cryo
8198159 8198159 PRJNA561212_P_NODE_11327_length_329_cov_1.687500_g11116_i0 PRJNA561212 11327 329 1.6875 5.551875 Esquamula lacrimiformis 1176540 SAR_Eukaryotes SAR_Eukaryotes 281 3.63e-71   NTclustered gi|409971369|dbj|AB714271.1| 1176540 g11116 i0 93.229 58.9300911854103 192 12 58 1 10 200 3665 3856 Esquamula lacrimiformis gene for 28S ribosomal RNA, partial sequence blastn 19388 281 1 Eukaryota Sar   Cercozoa Imbricatea Thaumatomonadida   Esquamula Esquamula lacrimiformis
14574387 14574387 PRJNA561212_P_NODE_20752_length_252_cov_0.871508_g20541_i0 PRJNA561212 20752 252 0.871508 2.19620016 Massisteria marina 127229 SAR_Eukaryotes SAR_Eukaryotes 276 1.2499999999999998e-69   NTclustered gi|302026190|gb|GQ377684.1| 127229 g20541 i0 87.603 93.8293650793651 242 25 95 5 4 243 717 955 Massisteria marina HSP90 gene, partial cds blastn 23645 276 1 Eukaryota Sar   Cercozoa     Massisteriidae Massisteria Massisteria marina
20947612 20947612 PRJNA561212_P_NODE_25477_length_243_cov_0.917647_g25266_i0 PRJNA561212 25477 243 0.917647 2.22988221 Paulinella chromatophora 39717 SAR_Eukaryotes SAR_Eukaryotes 235 2.03e-57   NTclustered gi|224549835|gb|FJ456916.1| 39717 g25266 i0 85.909 90.7818930041152 220 31 91 0 10 229 478 697 Paulinella chromatophora strain M0880/a actin gene, partial cds blastn 22060 235 1 Eukaryota Sar   Cercozoa Imbricatea Euglyphida Paulinellidae Paulinella Paulinella chromatophora

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;