RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA561212" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA561212 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10749715 10749715 PRJNA561212_P_NODE_21429_length_251_cov_0.876404_g21218_i0 PRJNA561212 21429 251 0.876404 2.19977404 Bdellovibrio bacteriovorus 959 Bacteria Bacteria 298 2.65e-76   NTclustered gi|578016248|gb|CP002190.1| 765869 g21218 i0 89.451 541.629482071713 237 24 94 1 10 245 610539 610303 Bdellovibrio bacteriovorus W, complete genome blastn 135949 298 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus
22222365 22222365 PRJNA561212_P_NODE_14578_length_293_cov_3.522727_g14367_i0 PRJNA561212 14578 293 3.522727 10.32159011 Micavibrio aeruginosavorus 349221 Bacteria Bacteria 420 6.469999999999998e-113   NTclustered gi|1950812799|gb|CP066681.1| 349221 g14367 i0 94.505 263.184300341297 273 13 93 2 14 285 658548 658277 Micavibrio aeruginosavorus isolate NC_groundwater_70_Ag_B-0.1um_54_66 chromosome blastn 77113 420 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio aeruginosavorus
22807829 22807829 PRJNA561212_P_NODE_14458_length_294_cov_4.108597_g14247_i0 PRJNA561212 14458 294 4.108597 12.07927518 Halobacteriovorax 1652133 Bacteria Bacteria 510 3.74e-140   NTclustered gi|1249980216|gb|CP017414.1| 97084 g14247 i0 100 308.676870748299 276 0 94 0 10 285 235265 234990 Halobacteriovorax marinus strain BE01 chromosome, complete genome blastn 90751 510 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Halobacteriovoraceae Halobacteriovorax Halobacteriovorax marinus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;