RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA561212" and tax_phylum = "Acidobacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA561212 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13299462 13299462 PRJNA561212_P_NODE_19671_length_256_cov_1.322404_g19460_i0 PRJNA561212 19671 256 1.322404 3.38535424 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 370 5.66e-98   NTclustered gi|117557513|emb|AM180902.2| 171953 g19460 i0 94.583 130.8359375 240 11 93 2 9 247 422 184 Uncultured Acidobacteria bacterium partial 23S rRNA gene, clone ZC6 blastn 33494 370 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
13299477 13299477 PRJNA561212_P_NODE_20891_length_252_cov_0.871508_g20680_i0 PRJNA561212 20891 252 0.871508 2.19620016 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 294 3.44e-75   NTclustered gi|2874254108|emb|OY970193.1| 171953 g20680 i0 89.362 59.4563492063492 235 23 93 2 10 243 1689567 1689334 MAG: uncultured Acidobacteriota bacterium isolate MFD09206.bin.1.42 genome assembly, chromosome: 1 blastn 14983 294 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;