RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA561212" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 4 ✖

bioproject 1

  • PRJNA561212 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3682009 3682009 PRJNA561212_P_NODE_19183_length_259_cov_215.231183_g18972_i0 PRJNA561212 19183 259 215.231183 557.44876397 Deinococcus 1298 Bacteria Bacteria 217 7.9e-52   NTclustered gi|485099143|ref|NR_102538.1| 432329 g18972 i0 83.817 386.274131274131 241 25 89 10 13 243 256 20 Deinococcus peraridilitoris strain KR-200 23S ribosomal RNA gene, complete sequence blastn 100045 217 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus peraridilitoris
6923351 6923351 PRJNA561212_P_NODE_16286_length_280_cov_1.429952_g16075_i0 PRJNA561212 16286 280 1.429952 4.0038656 Deinococcus sp. KNUC1210 2917691 Bacteria Bacteria 333 8.23e-87   NTclustered gi|2197029603|gb|CP092190.1| 2917691 g16075 i0 93.392 196.821428571429 227 12 81 2 20 245 1426655 1426431 Deinococcus sp. KNUC1210 chromosome, complete genome blastn 55110 333 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp. KNUC1210
14574195 14574195 PRJNA561212_P_NODE_10132_length_346_cov_11.040293_g9921_i0 PRJNA561212 10132 346 11.040293 38.19941378 Deinococcus sp. KNUC1210 2917691 Bacteria Bacteria 440 5.979999999999997e-119   NTclustered gi|2197029603|gb|CP092190.1| 2917691 g9921 i0 90.208 212.661849710983 337 33 97 0 10 346 1427412 1427076 Deinococcus sp. KNUC1210 chromosome, complete genome blastn 73581 440 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp. KNUC1210
20947425 20947425 PRJNA561212_P_NODE_1337_length_934_cov_27.349593_g1171_i0 PRJNA561212 1337 934 27.349593 255.44519862 Deinococcus maricopensis 309887 Bacteria Bacteria 547 9.879999999999999e-151   NTclustered gi|319753907|gb|CP002454.1| 709986 g1171 i0 83.07 135.541755888651 632 78 99 27 312 925 640709 640089 Deinococcus maricopensis DSM 21211, complete genome blastn 126596 547 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus maricopensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;