RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA561212" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 5 ✖

bioproject 1

  • PRJNA561212 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4372850 4372850 PRJNA561212_P_NODE_21704_length_250_cov_0.881356_g21493_i0 PRJNA561212 21704 250 0.881356 2.20339 Dunaliella salina 3046 Plants Plants 106 1.71e-18   NTclustered gi|2599103|gb|AF028833.1|AF028833 3046 g21493 i0 78.395 0.648 162 35 65 0 45 206 56 217 Dunaliella salina 60S ribosomal protein (DSRP1) mRNA, complete cds blastn 162 106 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Dunaliellaceae Dunaliella Dunaliella salina
4958818 4958818 PRJNA561212_P_NODE_4224_length_538_cov_2.086022_g4016_i0 PRJNA561212 4224 538 2.086022 11.22279836 Eukaryota 2759 Plants Plants 316 1.7000000000000002e-81   NTclustered gi|2082259086|ref|XM_001697336.2| 3055 g4016 i0 81.654 65.4553903345725 387 65 71 6 124 507 127 510 Chlamydomonas reinhardtii ribosomal protein S14 (CHLRE_11g480150v5), mRNA blastn 35215 318 0.993710691823899 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
10749641 10749641 PRJNA561212_P_NODE_17069_length_275_cov_0.881188_g16858_i0 PRJNA561212 17069 275 0.881188 2.423267 Dicloster acuatus 91190 Plants Plants 272 1.78e-68   NTclustered gi|2724824305|gb|PP746556.1| 91190 g16858 i0 85.992 85.7563636363636 257 32 93 3 11 265 41821 41567 Dicloster acuatus culture SAG:41.98 mitochondrion, complete genome blastn 23583 272 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Dicloster Dicloster acuatus
12609693 12609693 PRJNA561212_P_NODE_9310_length_361_cov_1.024306_g9099_i0 PRJNA561212 9310 361 1.024306 3.69774466 Eukaryota 2759 Plants Plants 54.7 0.01   NTclustered gi|302837886|ref|XM_002950456.1| 3068 g9099 i0 96.97 6.03324099722992 33 0 9 1 6 37 8831 8799 Volvox carteri f. nagariensis uncharacterized protein (VOLCADRAFT_90946), partial mRNA blastn 2178 54.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox carteri
24771785 24771785 PRJNA561212_P_NODE_6120_length_446_cov_1.871314_g5909_i0 PRJNA561212 6120 446 1.871314 8.34606044 Chlamydomonas reinhardtii 3055 Plants Plants 56.5 0.003   NTclustered gi|2082237476|ref|XM_043058889.1| 3055 g5909 i0 96.97 0.147982062780269 33 1 7 0 406 438 4561 4593 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_01g046237v5), mRNA blastn 66 56.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;