RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA561138" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA561138 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6922983 6922983 PRJNA561138_P_NODE_14766_length_341_cov_1.149254_g14571_i0 PRJNA561138 14766 341 1.149254 3.91895614 Polyangium aurulentum 2567896 Bacteria Bacteria 143 1.86e-29   NTclustered gi|2235996827|gb|CP079217.1| 2567896 g14571 i0 79.703 40.7595307917889 202 37 59 2 23 222 1536942 1537141 Polyangium aurulentum strain SDU3-1 chromosome, complete genome blastn 13899 143 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Polyangium Polyangium aurulentum
18397006 18397006 PRJNA561138_P_NODE_27015_length_247_cov_0.885057_g26820_i0 PRJNA561138 27015 247 0.885057 2.18609079 Anaeromyxobacter oryzae 2918170 Bacteria Bacteria 169 2.1199999999999996e-37   NTclustered gi|2199265233|dbj|AP025591.1| 2918170 g26820 i0 79.752 73.5587044534413 242 41 96 7 4 241 438030 438267 Anaeromyxobacter oryzae DNA, complete genome blastn 18169 169 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Anaeromyxobacteraceae Anaeromyxobacter Anaeromyxobacter oryzae
20947181 20947181 PRJNA561138_P_NODE_17057_length_317_cov_1.057377_g16862_i0 PRJNA561138 17057 317 1.057377 3.35188509 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 52.8 0.03   NTclustered gi|2108253172|gb|CP070689.1| 2026735 g16862 i0 100 0.0883280757097792 28 0 9 0 123 150 119126 119153 MAG: Deltaproteobacteria bacterium isolate bin63 chromosome blastn 28 52.8 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
23497304 23497304 PRJNA561138_P_NODE_11519_length_382_cov_0.974110_g11324_i0 PRJNA561138 11519 382 0.97411 3.7211002 Minicystis rosea 888845 Bacteria Bacteria 193 2.06e-44   NTclustered gi|1127353251|gb|CP016211.1| 888845 g11324 i0 77.049 20.5157068062827 366 64 93 17 18 373 9964998 9965353 Minicystis rosea strain DSM 24000 chromosome, complete genome blastn 7837 193 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Minicystis Minicystis rosea

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;