RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA561138" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA561138 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22222264 22222264 PRJNA561138_P_NODE_6778_length_477_cov_1.143564_g6584_i0 PRJNA561138 6778 477 1.143564 5.45480028 Bryobacterales bacterium 2026791 Bacteria Bacteria 318 4.15e-82   NTclustered gi|2893356062|emb|OZ220485.1| 2026791 g6584 i0 79.368 5.27253668763103 475 81 98 15 8 475 1913712 1913248 MAG: Bryobacterales bacterium isolate 86978798-6d99-423e-8588-835106a9727b genome assembly, chromosome: 1 blastn 2515 318 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales     Bryobacterales bacterium
24771226 24771226 PRJNA561138_P_NODE_11820_length_377_cov_1.519737_g11625_i0 PRJNA561138 11820 377 1.519737 5.72940849 Vicinamibacteria bacterium 2793154 Bacteria Bacteria 145 5.7599999999999994e-30   NTclustered gi|2893358421|emb|OZ220713.1| 2793154 g11625 i0 74.79 29.0132625994695 357 73 93 14 28 377 3142246 3142592 MAG: Vicinamibacteria bacterium isolate f5636fb4-303b-4095-abf0-868cc3675b90 genome assembly, chromosome: 1 blastn 10938 145 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria       Vicinamibacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;