RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA561138" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 3 ✖

bioproject 1

  • PRJNA561138 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8198007 8198007 PRJNA561138_P_NODE_24227_length_252_cov_1.720670_g24032_i0 PRJNA561138 24227 252 1.72067 4.3360884 Deinococcus geothermalis 68909 Bacteria Bacteria 411 3.269999999999999e-110   NTclustered gi|94554390|gb|CP000359.1| 319795 g24032 i0 96.032 203.456349206349 252 10 100 0 1 252 328468 328719 Deinococcus geothermalis DSM 11300, complete genome blastn 51271 411 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus geothermalis
20257166 20257166 PRJNA561138_P_NODE_22076_length_272_cov_1.160804_g21881_i0 PRJNA561138 22076 272 1.160804 3.15738688 Deinococcus 1298 Bacteria Bacteria 409 1.29e-109   NTclustered gi|1220362168|gb|CP021081.1| 317577 g21881 i0 95.669 212.746323529412 254 11 93 0 19 272 2341819 2341566 Deinococcus ficus strain CC-FR2-10, complete genome blastn 57867 409 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus ficus
21532675 21532675 PRJNA561138_P_NODE_29717_length_241_cov_1.809524_g29522_i0 PRJNA561138 29717 241 1.809524 4.36095284 Deinococcus 1298 Bacteria Bacteria 278 3.29e-70   NTclustered gi|110083370|dbj|AB264133.1| 392407 g29522 i0 88.382 102.435684647303 241 14 99 8 2 241 40 267 Deinococcus sp. TDMA-21 gene for 16S rRNA, partial sequence blastn 24687 278 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp. TDMA-21

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;