RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA561138" and tax_clade = "Discoba"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Discoba · 2 ✖

bioproject 1

  • PRJNA561138 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3681951 3681951 PRJNA561138_P_NODE_23583_length_258_cov_1.572973_g23388_i0 PRJNA561138 23583 258 1.572973 4.05827034 Trypanosomatidae 5654 Euglenozoa other_Eukaryota 405 1.56e-108   NTclustered gi|388850727|gb|JX021440.1| 5661 g23388 i0 94.961 100 258 13 100 0 1 258 879 622 Leishmania donovani strain IAND/CN/93/4 heat-shock protein 70 (hsp70) gene, partial cds blastn 25800 405 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania donovani
14574163 14574163 PRJNA561138_P_NODE_5192_length_544_cov_1.152866_g5001_i0 PRJNA561138 5192 544 1.152866 6.27159104 Neobodo designis 312471 Euglenozoa other_Eukaryota 939 0   NTclustered gi|197723537|gb|EF681922.2| 312471 g5001 i0 97.794 157 544 12 100 0 1 544 1166 623 Neobodo designis strain HFCC97 28S ribosomal RNA gene, partial sequence blastn 85408 939 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Neobodonida   Neobodo Neobodo designis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;