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contig_metadata

23 rows where analysis = "blastn", bioproject = "PRJNA560932" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 23 ✖

bioproject 1

  • PRJNA560932 · 23 ✖

analysis 1

  • blastn · 23 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1130570 1130570 PRJNA560932_P_NODE_25641_length_352_cov_1.713262_g25285_i0 PRJNA560932 25641 352 1.713262 6.03068224 Betaretrovirus 140052 Viruses Viruses 651 0   NTclustered gi|9627014|ref|NC_001514.1| 11856 g25285 i0 100 3.59659090909091 352 0 100 0 1 352 4365 4014 Squirrel monkey retrovirus - HLB, complete genome blastn 1266 651 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Betaretrovirus squmon
2405940 2405940 PRJNA560932_P_NODE_24702_length_358_cov_1.059649_g24346_i0 PRJNA560932 24702 358 1.059649 3.7935434200000002 Mimivirus 315393 Viruses Viruses 189 2.48e-43   NTclustered gi|2267817464|gb|MW685904.1| 212035 g24346 i0 80.233 16.8128491620112 258 46 72 5 1 256 795379 795125 Acanthamoeba polyphaga mimivirus isolate M4, complete genome blastn 6019 189 1 Viruses   Bamfordvirae Nucleocytoviricota Megaviricetes Imitervirales Mimiviridae Mimivirus Mimivirus bradfordmassiliense
2405950 2405950 PRJNA560932_P_NODE_33302_length_314_cov_1.481328_g32946_i0 PRJNA560932 33302 314 1.481328 4.65136992 Betaretrovirus 140052 Viruses Viruses 569 6.559999999999998e-158   NTclustered gi|9627014|ref|NC_001514.1| 11856 g32946 i0 99.363 4.28980891719745 314 2 100 0 1 314 7700 8013 Squirrel monkey retrovirus - HLB, complete genome blastn 1347 569 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Betaretrovirus squmon
4372274 4372274 PRJNA560932_P_NODE_57804_length_247_cov_0.885057_g57448_i0 PRJNA560932 57804 247 0.885057 2.18609079 Caudoviricetes sp. 2832643 Viruses Viruses 451 1.88e-122   NTclustered gi|2914928861|gb|OR221539.1| 2832643 g57448 i0 99.595 99.7125506072875 247 1 100 0 1 247 14024 13778 MAG: Caudoviricetes sp. isolate MSP1537 genomic sequence blastn 24629 451 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
6234114 6234114 PRJNA560932_P_NODE_20385_length_390_cov_1.552050_g20029_i0 PRJNA560932 20385 390 1.55205 6.052995 Betaretrovirus 140052 Viruses Viruses 710 0   NTclustered gi|1666023499|gb|MK561030.1| 11856 g20029 i0 99.487 3.15128205128205 390 2 100 0 1 390 1053 664 Squirrel monkey retrovirus, complete genome blastn 1229 710 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Betaretrovirus squmon
6922692 6922692 PRJNA560932_P_NODE_41606_length_283_cov_1.195238_g41250_i0 PRJNA560932 41606 283 1.195238 3.38252354 Caudoviricetes sp. 2832643 Viruses Viruses 95.3 4.28e-15   NTclustered gi|2914981896|gb|OR222105.1| 2832643 g41250 i0 98.148 25.7526501766784 54 1 19 0 225 278 4 57 MAG: Caudoviricetes sp. isolate MSP0005 genomic sequence blastn 7288 95.3 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
8197721 8197721 PRJNA560932_P_NODE_53867_length_250_cov_0.870056_g53511_i0 PRJNA560932 53867 250 0.870056 2.17514 Lentivirus simimdef 3418654 Viruses Viruses 52.8 0.023   NTclustered gi|444342259|gb|JX498544.1| 11723 g53511 i0 100 2.016 28 0 11 0 143 170 482 455 Simian immunodeficiency virus isolate P146.P1A12 from USA rev protein (rev) gene, complete cds; tat protein (tat) gene, partial cds; envelope glycoprotein (env) gene, complete cds; and nonfunctional nef protein (nef) gene, partial sequence blastn 504 52.8 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus simimdef
9473074 9473074 PRJNA560932_P_NODE_15768_length_442_cov_1.149051_g15413_i0 PRJNA560932 15768 442 1.149051 5.07880542 Betaretrovirus murmamtum 3427295 Viruses Viruses 784 0   NTclustered gi|3273865|gb|AF071010.1|AF071010 11757 g15413 i0 98.643 54.1131221719457 442 6 100 0 1 442 2350 2791 Mouse mammary tumor virus putative integrase, env polyprotein, and superantigen mRNA, complete cds blastn 23918 784 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Betaretrovirus murmamtum
9473123 9473123 PRJNA560932_P_NODE_20688_length_387_cov_4.952229_g20332_i0 PRJNA560932 20688 387 4.952229 19.16512623 Gammaretrovirus murleu 3428959 Viruses Viruses 566 1.0699999999999999e-156   NTclustered gi|332046|gb|M13080.1|MLVLTRAB 11786 g20332 i0 98.746 121.509043927649 319 3 98 1 70 387 125 443 Murine leukemia virus RadLV variant, proviral LTR from cell line Ti-8 blastn 47024 566 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
10059076 10059076 PRJNA560932_P_NODE_14888_length_454_cov_2.228346_g14533_i0 PRJNA560932 14888 454 2.228346 10.11669084 Betaretrovirus 140052 Viruses Viruses 826 0   NTclustered gi|9627014|ref|NC_001514.1| 11856 g14533 i0 99.559 8.51982378854625 454 1 100 1 1 454 8199 8651 Squirrel monkey retrovirus - HLB, complete genome blastn 3868 826 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Betaretrovirus squmon
12023659 12023659 PRJNA560932_P_NODE_24010_length_362_cov_2.453287_g23654_i0 PRJNA560932 24010 362 2.453287 8.88089894 Alphapapillomavirus 7 337042 Viruses Viruses 669 0   NTclustered gi|2733486712|gb|PP781986.1| 333761 g23654 i0 100 100 362 0 100 0 1 362 1460 1099 Human papillomavirus 18 isolate InDRE-41Tams/Mexico/2023, complete genome blastn 36200 669 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae Alphapapillomavirus Alphapapillomavirus 7
13298819 13298819 PRJNA560932_P_NODE_51731_length_251_cov_1.724719_g51375_i0 PRJNA560932 51731 251 1.724719 4.32904469 Hokovirus HKV1 1977638 Viruses Viruses 183 7.73e-42   NTclustered gi|1174571674|gb|KY684104.1| 1977638 g51375 i0 84.699 107.107569721116 183 28 73 0 67 249 162161 161979 Hokovirus HKV1 isolate HKV1 clone Hokovirus_2, sequence blastn 26884 183 1 Viruses   Bamfordvirae Nucleocytoviricota Megaviricetes Imitervirales Mimiviridae Hokovirus Hokovirus HKV1
16433272 16433272 PRJNA560932_P_NODE_59113_length_246_cov_1.335260_g58757_i0 PRJNA560932 59113 246 1.33526 3.2847396 Betaretrovirus 140052 Viruses Viruses 455 1.4500000000000002e-123   NTclustered gi|9627014|ref|NC_001514.1| 11856 g58757 i0 100 4 246 0 100 0 1 246 6488 6733 Squirrel monkey retrovirus - HLB, complete genome blastn 984 455 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Betaretrovirus squmon
17122531 17122531 PRJNA560932_P_NODE_58134_length_247_cov_0.885057_g57778_i0 PRJNA560932 58134 247 0.885057 2.18609079 Faxonius propinquus nudivirus 3139431 Viruses Viruses 56.5 0.002   NTclustered gi|2717329057|gb|PP539709.1| 3139431 g57778 i0 92.683 0.331983805668016 41 0 16 2 11 49 124550 124589 Faxonius propinquus nudivirus isolate FP6H, complete genome blastn 82 56.5 1 Viruses       Naldaviricetes Lefavirales Nudiviridae   Faxonius propinquus nudivirus
18396660 18396660 PRJNA560932_P_NODE_49675_length_258_cov_1.162162_g49319_i0 PRJNA560932 49675 258 1.162162 2.99837796 Betaretrovirus murmamtum 3427295 Viruses Viruses 460 3.29e-125   NTclustered gi|3273865|gb|AF071010.1|AF071010 11757 g49319 i0 98.837 69.2945736434109 258 3 100 0 1 258 1610 1353 Mouse mammary tumor virus putative integrase, env polyprotein, and superantigen mRNA, complete cds blastn 17878 460 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Betaretrovirus murmamtum
18981943 18981943 PRJNA560932_P_NODE_29435_length_331_cov_2.875969_g29079_i0 PRJNA560932 29435 331 2.875969 9.51945739 Betaretrovirus 140052 Viruses Viruses 612 1.14e-170   NTclustered gi|9627014|ref|NC_001514.1| 11856 g29079 i0 100 4.20845921450151 331 0 100 0 1 331 5862 5532 Squirrel monkey retrovirus - HLB, complete genome blastn 1393 612 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Betaretrovirus squmon
19671113 19671113 PRJNA560932_P_NODE_30696_length_326_cov_1.217391_g30340_i0 PRJNA560932 30696 326 1.217391 3.96869466 Microviridae sp. 2202644 Viruses Viruses 52.8 0.031   NTclustered gi|2636866959|gb|OR407820.1| 2202644 g30340 i0 100 0.0858895705521472 28 0 9 0 204 231 364 391 MAG: Microviridae sp. isolate xizangnaqu01-28471 genomic sequence blastn 28 52.8 1 Viruses   Sangervirae Phixviricota Malgrandaviricetes Petitvirales Microviridae   Microviridae sp.
19671219 19671219 PRJNA560932_P_NODE_43856_length_276_cov_1.310345_g43500_i0 PRJNA560932 43856 276 1.310345 3.6165522 Bacteriophage sp. 38018 Viruses Viruses 56.5 0.002   NTclustered gi|2293573864|gb|OP072313.1| 38018 g43500 i0 90.909 0.264492753623188 44 1 16 2 64 107 70212 70252 MAG: Bacteriophage sp. isolate 2452_64193, partial genome blastn 73 56.5 1 Viruses               Bacteriophage sp.
20257102 20257102 PRJNA560932_P_NODE_5436_length_735_cov_1.993958_g5105_i0 PRJNA560932 5436 735 1.993958 14.6555913 Tequatrovirus 10663 Viruses Viruses 1079 0   NTclustered gi|2721715921|emb|OZ035787.1| 10665 g5105 i0 100 79.4557823129252 584 0 79 0 152 735 38777 38194 Tequatrovirus T4 genome assembly, chromosome: 1 blastn 58400 1079 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes Pantevenvirales Straboviridae Tequatrovirus Tequatrovirus T4
20946763 20946763 PRJNA560932_P_NODE_28157_length_338_cov_1.773585_g27801_i0 PRJNA560932 28157 338 1.773585 5.9947173 Betaretrovirus squmon 3427297 Viruses Viruses 625 1.4999999999999999e-174   NTclustered gi|1666023499|gb|MK561030.1| 11856 g27801 i0 100 4 338 0 100 0 1 338 2431 2094 Squirrel monkey retrovirus, complete genome blastn 1352 625 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Betaretrovirus squmon
22221980 22221980 PRJNA560932_P_NODE_8218_length_606_cov_1.744841_g7865_i0 PRJNA560932 8218 606 1.744841 10.57373646 Lentivirus humimdef1 3418650 Viruses Viruses 62.1 9.97e-5   NTclustered gi|407734945|gb|JX447155.1| 11676 g7865 i0 95 0.132013201320132 40 0 7 2 27 66 4357 4394 HIV-1 isolate AA039a03R from Thailand pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds blastn 80 62.1 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
22807673 22807673 PRJNA560932_P_NODE_18_length_4859_cov_3.129545_g12_i0 PRJNA560932 18 4859 3.129545 152.06459155 Gammaretrovirus 153135 Viruses Viruses 8346 0   NTclustered gi|1167936743|gb|KY574509.1| 11786 g12 i0 98.239 97.1697880222268 4771 84 98 0 75 4845 2472 7242 Murine leukemia virus isolate Akv2-C78, complete genome blastn 472148 8346 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
22807687 22807687 PRJNA560932_P_NODE_30458_length_327_cov_1.216535_g30102_i0 PRJNA560932 30458 327 1.216535 3.97806945 Betaretrovirus 140052 Viruses Viruses 604 1.8799999999999993e-168   NTclustered gi|9627014|ref|NC_001514.1| 11856 g30102 i0 100 3.75840978593272 327 0 100 0 1 327 4724 4398 Squirrel monkey retrovirus - HLB, complete genome blastn 1229 604 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Betaretrovirus squmon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;