RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA560932" and tax_phylum = "Rhodophyta"

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tax_superkingdom 1

tax_phylum 1

  • Rhodophyta · 4 ✖

bioproject 1

  • PRJNA560932 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1820146 1820146 PRJNA560932_P_NODE_12482_length_494_cov_2.308789_g12128_i0 PRJNA560932 12482 494 2.308789 11.40541766 Chondrus crispus 2769 Rhodophyta other_Eukaryota 52.8 0.048   NTclustered gi|546326410|ref|XM_005718885.1| 2769 g12128 i0 100 0.0566801619433198 28 0 6 0 301 328 553 526 Chondrus crispus Alpha-glucan water dikinase (CHC_T00008789001) mRNA, complete cds blastn 28 52.8 1 Eukaryota     Rhodophyta Florideophyceae Gigartinales Gigartinaceae Chondrus Chondrus crispus
14573728 14573728 PRJNA560932_P_NODE_49532_length_258_cov_1.621622_g49176_i0 PRJNA560932 49532 258 1.621622 4.18378476 Pyropia orbicularis 1526596 Rhodophyta other_Eukaryota 58.4 5.05e-4   NTclustered gi|1846448610|gb|MN449486.1| 1526596 g49176 i0 94.737 0.817829457364341 38 0 15 2 114 151 239 274 Pyropia orbicularis clone Py.orb9 microsatellite sequence blastn 211 58.4 1 Eukaryota     Rhodophyta Bangiophyceae Bangiales Bangiaceae Pyropia Pyropia orbicularis
17122417 17122417 PRJNA560932_P_NODE_43694_length_276_cov_2.182266_g43338_i0 PRJNA560932 43694 276 2.182266 6.02305416 Pyropia yezoensis 2788 Rhodophyta other_Eukaryota 189 1.8499999999999993e-43   NTclustered gi|31745023|dbj|AB098024.1| 2788 g43338 i0 80.078 83.7101449275362 256 49 92 2 22 276 1512 1258 Porphyra yezoensis EF-1a gene for elongation factor-1a, complete cds blastn 23104 189 1 Eukaryota     Rhodophyta Bangiophyceae Bangiales Bangiaceae Pyropia Pyropia yezoensis
23497114 23497114 PRJNA560932_P_NODE_48519_length_261_cov_2.446809_g48163_i0 PRJNA560932 48519 261 2.446809 6.38617149 Dasya binghamiae 1896963 Rhodophyta other_Eukaryota 143 1.37e-29   NTclustered gi|1070108624|ref|NC_031160.1| 1896963 g48163 i0 81.503 49.7816091954023 173 32 66 0 5 177 7364 7536 Dasya binghamiae voucher UC2050572 mitochondrion, complete genome blastn 12993 143 1 Eukaryota     Rhodophyta Florideophyceae Ceramiales Dasyaceae Dasya Dasya binghamiae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;