RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA560932" and tax_phylum = "Porifera"

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tax_superkingdom 1

tax_phylum 1

  • Porifera · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA560932 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1820129 1820129 PRJNA560932_P_NODE_11502_length_514_cov_3.705215_g11148_i0 PRJNA560932 11502 514 3.705215 19.0448051 Sycon ciliatum 27933 Porifera other_Eukaryota 331 5.7700000000000004e-86   NTclustered gi|2732929399|ref|XM_065331779.1| 27933 g11148 i0 82.973 68.4455252918288 370 60 72 3 102 469 188 556 PREDICTED: Sycon ciliatum small ribosomal subunit protein uS12 (LOC135818406), mRNA blastn 35181 331 1 Eukaryota Opisthokonta Metazoa Porifera Calcarea Leucosolenida Sycettidae Sycon Sycon ciliatum
3095868 3095868 PRJNA560932_P_NODE_8763_length_587_cov_4.764591_g8410_i0 PRJNA560932 8763 587 4.764591 27.96814917 Sycon ciliatum 27933 Porifera other_Eukaryota 337 1.4299999999999995e-87   NTclustered gi|2732905936|ref|XM_065340963.1| 27933 g8410 i0 77.917 94.0255536626916 557 111 94 12 36 586 1246 696 PREDICTED: Sycon ciliatum actin, cytoplasmic A3-like (LOC135828522), mRNA blastn 55193 337 1 Eukaryota Opisthokonta Metazoa Porifera Calcarea Leucosolenida Sycettidae Sycon Sycon ciliatum
10748817 10748817 PRJNA560932_P_NODE_17009_length_426_cov_1.801700_g16653_i0 PRJNA560932 17009 426 1.8017 7.675242 Suberites domuncula 55567 Porifera other_Eukaryota 278 6.22e-70   NTclustered gi|89258390|gb|DQ414546.1| 55567 g16653 i0 80.912 15.6737089201878 351 67 82 0 37 387 357 7 Suberites domuncula Rap1 gene, complete cds blastn 6677 278 1 Eukaryota Opisthokonta Metazoa Porifera Demospongiae Suberitida Suberitidae Suberites Suberites domuncula

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;