RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA560932" and tax_phylum = "Platyhelminthes"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA560932 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19670980 19670980 PRJNA560932_P_NODE_16256_length_435_cov_10.745856_g15900_i0 PRJNA560932 16256 435 10.745856 46.7444736 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 516 1.24e-141   NTclustered gi|68479954|gb|DQ076149.1| 6182 g15900 i0 88.863 0.970114942528736 422 44 97 3 6 425 12 432 Schistosoma japonicum clone 1XA1 unknown mRNA blastn 422 516 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
22807697 22807697 PRJNA560932_P_NODE_47298_length_265_cov_1.656250_g46942_i0 PRJNA560932 47298 265 1.65625 4.3890625 Prorhynchus 39219 Platyhelminthes Platyhelminthes 145 3.88e-30   NTclustered gi|588313908|gb|KC869866.1| 1468201 g46942 i0 86.923 40.9320754716981 130 16 49 1 136 265 951 1079 Prorhynchus stagnalis 28S ribosomal RNA gene, partial sequence blastn 10847 145 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Lecithoepitheliata Prorhynchidae Prorhynchus Prorhynchus stagnalis
25356889 25356889 PRJNA560932_P_NODE_45720_length_270_cov_1.563452_g45364_i0 PRJNA560932 45720 270 1.563452 4.2213204 Opisthokonta 33154 Platyhelminthes Platyhelminthes 52.8 0.025   NTclustered gi|690690726|emb|LN244835.1| 99802 g45364 i0 100 1.34814814814815 28 0 10 0 184 211 1205 1232 Spirometra erinaceieuropaei genome assembly S_erinaceieuropaei ,scaffold SPER_contig0050522 blastn 364 52.8 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Diphyllobothriidea Diphyllobothriidae Spirometra Spirometra erinaceieuropaei

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;