RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA560932" and tax_phylum = "Parabasalia"

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tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA560932 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6922655 6922655 PRJNA560932_P_NODE_3686_length_880_cov_2.189591_g3402_i0 PRJNA560932 3686 880 2.189591 19.2684008 Trichomonas vaginalis 5722 Parabasalia other_Eukaryota 84.2 3.15e-11   NTclustered gi|154412934|ref|XM_001579449.1| 412133 g3402 i0 85.366 0.230681818181818 82 10 9 2 528 607 191 272 Trichomonas vaginalis G3 protein kinase protein (TVAGG3_0983640), partial mRNA blastn 203 84.2 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
13298613 13298613 PRJNA560932_P_NODE_23191_length_368_cov_1.566102_g22835_i0 PRJNA560932 23191 368 1.566102 5.76325536 Trichomonas vaginalis 5722 Parabasalia other_Eukaryota 54.7 0.01   NTclustered gi|123505775|ref|XM_001329021.1| 412133 g22835 i0 100 0.611413043478261 29 0 8 0 26 54 736 764 Trichomonas vaginalis G3 ribosomal protein S6 kinase family (TVAGG3_1000460), partial mRNA blastn 225 54.7 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
24770916 24770916 PRJNA560932_P_NODE_33260_length_314_cov_1.917012_g32904_i0 PRJNA560932 33260 314 1.917012 6.01941768 Trichomonas vaginalis 5722 Parabasalia other_Eukaryota 65.8 3.77e-6   NTclustered gi|2319615616|ref|XR_007835995.1| 412133 g32904 i0 90.385 0.74203821656051006 52 2 16 3 170 220 2610 2561 Trichomonas vaginalis G3 23S ribosomal RNA (TVAGG3_0034210), rRNA blastn 233 65.8 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;