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contig_metadata

13 rows where analysis = "blastn", bioproject = "PRJNA560932" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 13 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA560932 · 13 ✖

analysis 1

  • blastn · 13 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7508504 7508504 PRJNA560932_P_NODE_24726_length_357_cov_8.845070_g24370_i0 PRJNA560932 24726 357 8.84507 31.5768999 Pristionchus 54125 Nematoda Nematoda 156 2.4999999999999998e-33   NTclustered gi|524845312|gb|KC819366.1| 1355913 g24370 i0 80.269 33.6582633053221 223 30 61 11 65 280 264 49 Pristionchus hoplostomus strain JU1090 subunit ribosomal protein 20 (rps-20) mRNA, partial cds blastn 12016 156 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus hoplostomus
8783456 8783456 PRJNA560932_P_NODE_33247_length_314_cov_2.236515_g32891_i0 PRJNA560932 33247 314 2.236515 7.0226571 Pristionchus 54125 Nematoda Nematoda 154 7.83e-33   NTclustered gi|150984639|gb|EF634981.1| 452806 g32891 i0 80.905 19.3471337579618 199 34 63 4 51 247 247 51 Pristionchus sp. 11 RS5228 small subunit ribosomal protein 27 (rps-27) mRNA, complete cds blastn 6075 154 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus sp. 11 RS5228
12023819 12023819 PRJNA560932_P_NODE_43090_length_278_cov_1.502439_g42734_i0 PRJNA560932 43090 278 1.502439 4.17678042 Brugia malayi 6279 Nematoda Nematoda 244 3.9299999999999997e-60   NTclustered gi|2082288298|ref|XM_043081747.1| 6279 g42734 i0 82.963 36.4460431654676 270 46 97 0 1 270 1077 808 Brugia malayi Uncharacterized protein (Bma-rpt-2), partial mRNA blastn 10132 244 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Brugia Brugia malayi
12024014 12024014 PRJNA560932_P_NODE_9570_length_562_cov_13.441718_g9216_i0 PRJNA560932 9570 562 13.441718 75.54245516 Strongyloides ratti 34506 Nematoda Nematoda 289 3.88e-73   NTclustered gi|1376135693|ref|XM_024647883.1| 34506 g9216 i0 79.369 58.2864768683274 412 83 73 2 102 512 411 1 Strongyloides ratti Histone H3 (SRAE_1000098500), partial mRNA blastn 32757 289 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
13298911 13298911 PRJNA560932_P_NODE_65031_length_242_cov_0.911243_g64675_i0 PRJNA560932 65031 242 0.911243 2.20520806 Trichinella spiralis 6334 Nematoda Nematoda 448 2.3799999999999995e-121   NTclustered gi|339258119|ref|XM_003369198.1| 6334 g64675 i0 100 1 242 0 100 0 1 242 656 415 Trichinella spiralis putative venom allergen 5 (Tsp_04669) mRNA, complete cds blastn 242 448 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis
13884411 13884411 PRJNA560932_P_NODE_4891_length_773_cov_1.764286_g4565_i0 PRJNA560932 4891 773 1.764286 13.63793078 Opisthokonta 33154 Nematoda Nematoda 405 5.16e-108   NTclustered gi|2707544721|ref|XM_064178955.1| 51031 g4565 i0 84.487 54.2910737386805 419 55 54 6 288 704 411 1 Necator americanus uncharacterized protein (RB195_006080), partial mRNA blastn 41967 405 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Necator Necator americanus
15847266 15847266 PRJNA560932_P_NODE_11693_length_510_cov_5.215103_g11339_i0 PRJNA560932 11693 510 5.215103 26.5970253 Koerneria sp. RS1982 358044 Nematoda Nematoda 292 2.7e-74   NTclustered gi|150984497|gb|EF634891.1| 358044 g11339 i0 82.216 66.2254901960784 343 57 67 4 1 341 386 46 Koerneria sp. RS1982 small subunit ribosomal protein 14 (rps-14) mRNA, partial cds blastn 33775 292 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Koerneria Koerneria sp. RS1982
18396385 18396385 PRJNA560932_P_NODE_17915_length_415_cov_2.172515_g17559_i0 PRJNA560932 17915 415 2.172515 9.01593725 Pristionchus racemosae 1756234 Nematoda Nematoda 76.8 2.37e-9   NTclustered gi|953064353|gb|KT188888.1| 1756234 g17559 i0 85.526 5.50361445783133 76 7 18 4 342 415 1923 1996 Pristionchus racemosae 28S ribosomal RNA gene, partial sequence blastn 2284 76.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus racemosae
18396555 18396555 PRJNA560932_P_NODE_3655_length_885_cov_3.113300_g3372_i0 PRJNA560932 3655 885 3.1133 27.552705 Strongyloides ratti 34506 Nematoda Nematoda 608 4.2199999999999983e-169   NTclustered gi|1376147725|ref|XM_024654528.1| 34506 g3372 i0 83.562 67.5887005649717 657 100 74 8 215 867 1387 735 Strongyloides ratti ATP synthase subunit alpha, mitochondrial (SRAE_2000334600), partial mRNA blastn 59816 608 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
19670940 19670940 PRJNA560932_P_NODE_13076_length_483_cov_12.382927_g12722_i0 PRJNA560932 13076 483 12.382927 59.80953741 Pristionchus pauli 376545 Nematoda Nematoda 281 5.51e-71   NTclustered gi|150982019|gb|EF634598.1| 376545 g12722 i0 80.939 4.20496894409938 362 63 74 6 94 452 37 395 Pristionchus pauli large subunit ribosomal protein 23 (rpl-23) mRNA, partial cds blastn 2031 281 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus pauli
20946660 20946660 PRJNA560932_P_NODE_18797_length_406_cov_1.372372_g18441_i0 PRJNA560932 18797 406 1.372372 5.57183032 Pristionchus microcercus 3308705 Nematoda Nematoda 267 1.2799999999999998e-66   NTclustered gi|675119093|gb|KJ877426.1| 3308705 g18441 i0 80.882 85.5024630541872 340 62 83 3 14 352 410 73 Paroigolaimella micrura small subunit ribosomal protein 14 (rps-14) mRNA, partial cds blastn 34714 267 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus microcercus
20947019 20947019 PRJNA560932_P_NODE_60877_length_245_cov_0.895349_g60521_i0 PRJNA560932 60877 245 0.895349 2.19360505 Strongyloides papillosus 174720 Nematoda Nematoda 54.7 0.006   NTclustered gi|687022673|emb|LM525587.1| 174720 g60521 i0 100 0.118367346938776 29 0 12 0 46 74 68761 68789 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000010 blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
21532562 21532562 PRJNA560932_P_NODE_43497_length_277_cov_1.450980_g43141_i0 PRJNA560932 43497 277 1.45098 4.0192146 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 80.5 1.17e-10   NTclustered gi|2722344039|gb|PP729485.1| 6313 g43141 i0 95.918 17.6895306859206 49 2 18 0 229 277 5851 5803 Angiostrongylus cantonensis isolate Acan_SYD small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 4900 80.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Metastrongylidae Angiostrongylus Angiostrongylus cantonensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;