RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA560932" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA560932 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8197660 8197660 PRJNA560932_P_NODE_44327_length_274_cov_3.064677_g43971_i0 PRJNA560932 44327 274 3.064677 8.39721498 Haploplasma axanthum 29552 Bacteria Bacteria 176 1.43e-39   NTclustered gi|1563809587|emb|LR215048.1| 29552 g43971 i0 79.435 76.2189781021898 248 51 91 0 26 273 986914 986667 Acholeplasma axanthum strain NCTC10138 genome assembly, chromosome: 1 blastn 20884 176 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae Haploplasma Haploplasma axanthum
15847292 15847292 PRJNA560932_P_NODE_13793_length_471_cov_1.547739_g13438_i0 PRJNA560932 13793 471 1.547739 7.28985069 'Candidatus Bacilliplasma' mollicute 467748 Bacteria Bacteria 220 1.19e-52   NTclustered gi|94482888|gb|DQ485976.1| 467748 g13438 i0 85.514 49.4946921443737 214 27 45 2 4 213 975 762 'Candidatus Bacilloplasma' mollicute clone P10 16S ribosomal RNA gene, partial sequence blastn 23312 220 1 Bacteria   Bacillati Mycoplasmatota Mollicutes     Candidatus Bacilliplasma 'Candidatus Bacilliplasma' mollicute
18396732 18396732 PRJNA560932_P_NODE_59915_length_246_cov_0.890173_g59559_i0 PRJNA560932 59915 246 0.890173 2.18982558 Candidatus Phytoplasma fraxini 35780 Bacteria Bacteria 52.8 0.022   NTclustered gi|2714275034|gb|CP146843.1| 35780 g59559 i0 100 0.113821138211382 28 0 11 0 177 204 63709 63682 Candidatus Phytoplasma fraxini isolate AshY1 chromosome, complete genome blastn 28 52.8 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae Candidatus Phytoplasma Candidatus Phytoplasma fraxini
23497196 23497196 PRJNA560932_P_NODE_61219_length_245_cov_0.895349_g60863_i0 PRJNA560932 61219 245 0.895349 2.19360505 Acholeplasmataceae bacterium 1898209 Bacteria Bacteria 58.4 4.75e-4   NTclustered gi|2621784632|emb|OY781090.1| 1898209 g60863 i0 97.059 0.138775510204082 34 1 14 0 33 66 1219320 1219353 MAG: Acholeplasmataceae bacterium isolate ac846720-52a4-4ed8-8e7a-77cd78ec885f genome assembly, chromosome: 1 blastn 34 58.4 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae   Acholeplasmataceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;