RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA560932" and tax_phylum = "Endomyxa"

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tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA560932 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
544452 544452 PRJNA560932_P_NODE_16301_length_435_cov_1.276243_g15945_i0 PRJNA560932 16301 435 1.276243 5.55165705 Arachnula sp. CL12 862247 SAR_Eukaryotes SAR_Eukaryotes 558 2.03e-154   NTclustered gi|302026178|gb|GQ377695.1| 862247 g15945 i0 90.046 95.7011494252874 432 41 99 2 3 433 210 640 Arachnula sp. CL12 elongation factor 1 alpha mRNA, partial cds blastn 41630 558 1 Eukaryota Sar   Endomyxa   Vampyrellida Leptophryidae Arachnula Arachnula sp. CL12
1820364 1820364 PRJNA560932_P_NODE_35822_length_304_cov_0.930736_g35466_i0 PRJNA560932 35822 304 0.930736 2.82943744 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 172 2.08e-38   NTclustered gi|157887503|emb|AM411663.1| 37360 g35466 i0 80.973 26.0657894736842 226 35 74 5 2 226 620 402 Plasmodiophora brassicae actII gene for actin II, clone PbACTII blastn 7924 172 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;