RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA560932" and tax_phylum = "Echinodermata"

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tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA560932 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1820382 1820382 PRJNA560932_P_NODE_38022_length_295_cov_1.198198_g37666_i0 PRJNA560932 38022 295 1.198198 3.5346841 Diadema antillarum 105358 Echinodermata other_Eukaryota 52.8 0.027   NTclustered gi|2919514624|ref|XM_071652266.1| 105358 g37666 i0 100 0.189830508474576 28 0 9 0 94 121 2148 2121 PREDICTED: Diadema antillarum uncharacterized protein (LOC139741685), mRNA blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Diadematoida Diadematidae Diadema Diadema antillarum
9473490 9473490 PRJNA560932_P_NODE_9388_length_568_cov_1.244444_g9035_i0 PRJNA560932 9388 568 1.244444 7.06844192 Strongylocentrotus purpuratus 7668 Echinodermata other_Eukaryota 56.5 0.004   NTclustered gi|1752400073|ref|XM_030972871.1| 7668 g9035 i0 90.476 0.5 42 4 9 0 375 416 3508 3467 PREDICTED: Strongylocentrotus purpuratus serine/threonine-protein kinase WNK2 (LOC754534), transcript variant X4, mRNA blastn 284 56.5 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Strongylocentrotidae Strongylocentrotus Strongylocentrotus purpuratus
20946912 20946912 PRJNA560932_P_NODE_46437_length_268_cov_1.441026_g46081_i0 PRJNA560932 46437 268 1.441026 3.86194968 Lytechinus pictus 7653 Echinodermata other_Eukaryota 52.8 0.025   NTclustered gi|2707416077|ref|XM_054898589.2| 7653 g46081 i0 100 0.104477611940299 28 0 10 0 110 137 4114 4141 PREDICTED: Lytechinus pictus parkin coregulated gene protein homolog (LOC129260632), mRNA blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus pictus
23496841 23496841 PRJNA560932_P_NODE_15019_length_452_cov_1.836412_g14664_i0 PRJNA560932 15019 452 1.836412 8.30058224 Asterias rubens 7604 Echinodermata other_Eukaryota 95.3 7.18e-15   NTclustered gi|1834301632|ref|XM_033770905.1| 7604 g14664 i0 95 0.356194690265487 60 3 13 0 2 61 1359 1418 PREDICTED: Asterias rubens tubulin beta chain-like (LOC117289675), transcript variant X2, mRNA blastn 161 95.3 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Forcipulatida Asteriidae Asterias Asterias rubens
23497210 23497210 PRJNA560932_P_NODE_62919_length_244_cov_0.900585_g62563_i0 PRJNA560932 62919 244 0.900585 2.1974274 Lytechinus pictus 7653 Echinodermata other_Eukaryota 52.8 0.022   NTclustered gi|2707429100|ref|XM_054899116.2| 7653 g62563 i0 100 0.229508196721311 28 0 11 0 97 124 1871 1898 PREDICTED: Lytechinus pictus histamine N-methyltransferase-like (LOC129261046), transcript variant X1, mRNA blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus pictus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;