RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA560932" and tax_phylum = "Bdellovibrionota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA560932 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8197413 8197413 PRJNA560932_P_NODE_16807_length_429_cov_1.151685_g16451_i0 PRJNA560932 16807 429 1.151685 4.94072865 Bacteriovorax sp. HI3 2984118 Bacteria Bacteria 62.1 6.88e-5   NTclustered gi|2321225508|dbj|AP026946.1| 2984118 g16451 i0 95 0.0932400932400932 40 1 9 1 50 88 2869553 2869592 Bacteriovorax sp. HI3 DNA, complete genome blastn 40 62.1 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax sp. HI3
20947062 20947062 PRJNA560932_P_NODE_67717_length_234_cov_2.621118_g67361_i0 PRJNA560932 67717 234 2.621118 6.13341612 Spirobacillus cienkowskii 495820 Bacteria Bacteria 244 3.22e-60   NTclustered gi|2696024138|gb|CP146516.1| 495820 g67361 i0 85.532 190.696581196581 235 33 100 1 1 234 384925 384691 Spirobacillus cienkowskii strain FI-SP1 chromosome, complete genome blastn 44623 244 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Silvanigrellales   Spirobacillus Spirobacillus cienkowskii

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;