RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

14 rows where analysis = "blastn", bioproject = "PRJNA560932" and tax_kingdom = "Pararnavirae"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 14 ✖

bioproject 1

  • PRJNA560932 · 14 ✖

analysis 1

  • blastn · 14 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1130570 1130570 PRJNA560932_P_NODE_25641_length_352_cov_1.713262_g25285_i0 PRJNA560932 25641 352 1.713262 6.03068224 Betaretrovirus 140052 Viruses Viruses 651 0   NTclustered gi|9627014|ref|NC_001514.1| 11856 g25285 i0 100 3.59659090909091 352 0 100 0 1 352 4365 4014 Squirrel monkey retrovirus - HLB, complete genome blastn 1266 651 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Betaretrovirus squmon
2405950 2405950 PRJNA560932_P_NODE_33302_length_314_cov_1.481328_g32946_i0 PRJNA560932 33302 314 1.481328 4.65136992 Betaretrovirus 140052 Viruses Viruses 569 6.559999999999998e-158   NTclustered gi|9627014|ref|NC_001514.1| 11856 g32946 i0 99.363 4.28980891719745 314 2 100 0 1 314 7700 8013 Squirrel monkey retrovirus - HLB, complete genome blastn 1347 569 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Betaretrovirus squmon
6234114 6234114 PRJNA560932_P_NODE_20385_length_390_cov_1.552050_g20029_i0 PRJNA560932 20385 390 1.55205 6.052995 Betaretrovirus 140052 Viruses Viruses 710 0   NTclustered gi|1666023499|gb|MK561030.1| 11856 g20029 i0 99.487 3.15128205128205 390 2 100 0 1 390 1053 664 Squirrel monkey retrovirus, complete genome blastn 1229 710 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Betaretrovirus squmon
8197721 8197721 PRJNA560932_P_NODE_53867_length_250_cov_0.870056_g53511_i0 PRJNA560932 53867 250 0.870056 2.17514 Lentivirus simimdef 3418654 Viruses Viruses 52.8 0.023   NTclustered gi|444342259|gb|JX498544.1| 11723 g53511 i0 100 2.016 28 0 11 0 143 170 482 455 Simian immunodeficiency virus isolate P146.P1A12 from USA rev protein (rev) gene, complete cds; tat protein (tat) gene, partial cds; envelope glycoprotein (env) gene, complete cds; and nonfunctional nef protein (nef) gene, partial sequence blastn 504 52.8 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus simimdef
9473074 9473074 PRJNA560932_P_NODE_15768_length_442_cov_1.149051_g15413_i0 PRJNA560932 15768 442 1.149051 5.07880542 Betaretrovirus murmamtum 3427295 Viruses Viruses 784 0   NTclustered gi|3273865|gb|AF071010.1|AF071010 11757 g15413 i0 98.643 54.1131221719457 442 6 100 0 1 442 2350 2791 Mouse mammary tumor virus putative integrase, env polyprotein, and superantigen mRNA, complete cds blastn 23918 784 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Betaretrovirus murmamtum
9473123 9473123 PRJNA560932_P_NODE_20688_length_387_cov_4.952229_g20332_i0 PRJNA560932 20688 387 4.952229 19.16512623 Gammaretrovirus murleu 3428959 Viruses Viruses 566 1.0699999999999999e-156   NTclustered gi|332046|gb|M13080.1|MLVLTRAB 11786 g20332 i0 98.746 121.509043927649 319 3 98 1 70 387 125 443 Murine leukemia virus RadLV variant, proviral LTR from cell line Ti-8 blastn 47024 566 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
10059076 10059076 PRJNA560932_P_NODE_14888_length_454_cov_2.228346_g14533_i0 PRJNA560932 14888 454 2.228346 10.11669084 Betaretrovirus 140052 Viruses Viruses 826 0   NTclustered gi|9627014|ref|NC_001514.1| 11856 g14533 i0 99.559 8.51982378854625 454 1 100 1 1 454 8199 8651 Squirrel monkey retrovirus - HLB, complete genome blastn 3868 826 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Betaretrovirus squmon
16433272 16433272 PRJNA560932_P_NODE_59113_length_246_cov_1.335260_g58757_i0 PRJNA560932 59113 246 1.33526 3.2847396 Betaretrovirus 140052 Viruses Viruses 455 1.4500000000000002e-123   NTclustered gi|9627014|ref|NC_001514.1| 11856 g58757 i0 100 4 246 0 100 0 1 246 6488 6733 Squirrel monkey retrovirus - HLB, complete genome blastn 984 455 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Betaretrovirus squmon
18396660 18396660 PRJNA560932_P_NODE_49675_length_258_cov_1.162162_g49319_i0 PRJNA560932 49675 258 1.162162 2.99837796 Betaretrovirus murmamtum 3427295 Viruses Viruses 460 3.29e-125   NTclustered gi|3273865|gb|AF071010.1|AF071010 11757 g49319 i0 98.837 69.2945736434109 258 3 100 0 1 258 1610 1353 Mouse mammary tumor virus putative integrase, env polyprotein, and superantigen mRNA, complete cds blastn 17878 460 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Betaretrovirus murmamtum
18981943 18981943 PRJNA560932_P_NODE_29435_length_331_cov_2.875969_g29079_i0 PRJNA560932 29435 331 2.875969 9.51945739 Betaretrovirus 140052 Viruses Viruses 612 1.14e-170   NTclustered gi|9627014|ref|NC_001514.1| 11856 g29079 i0 100 4.20845921450151 331 0 100 0 1 331 5862 5532 Squirrel monkey retrovirus - HLB, complete genome blastn 1393 612 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Betaretrovirus squmon
20946763 20946763 PRJNA560932_P_NODE_28157_length_338_cov_1.773585_g27801_i0 PRJNA560932 28157 338 1.773585 5.9947173 Betaretrovirus squmon 3427297 Viruses Viruses 625 1.4999999999999999e-174   NTclustered gi|1666023499|gb|MK561030.1| 11856 g27801 i0 100 4 338 0 100 0 1 338 2431 2094 Squirrel monkey retrovirus, complete genome blastn 1352 625 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Betaretrovirus squmon
22221980 22221980 PRJNA560932_P_NODE_8218_length_606_cov_1.744841_g7865_i0 PRJNA560932 8218 606 1.744841 10.57373646 Lentivirus humimdef1 3418650 Viruses Viruses 62.1 9.97e-5   NTclustered gi|407734945|gb|JX447155.1| 11676 g7865 i0 95 0.132013201320132 40 0 7 2 27 66 4357 4394 HIV-1 isolate AA039a03R from Thailand pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds blastn 80 62.1 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
22807673 22807673 PRJNA560932_P_NODE_18_length_4859_cov_3.129545_g12_i0 PRJNA560932 18 4859 3.129545 152.06459155 Gammaretrovirus 153135 Viruses Viruses 8346 0   NTclustered gi|1167936743|gb|KY574509.1| 11786 g12 i0 98.239 97.1697880222268 4771 84 98 0 75 4845 2472 7242 Murine leukemia virus isolate Akv2-C78, complete genome blastn 472148 8346 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
22807687 22807687 PRJNA560932_P_NODE_30458_length_327_cov_1.216535_g30102_i0 PRJNA560932 30458 327 1.216535 3.97806945 Betaretrovirus 140052 Viruses Viruses 604 1.8799999999999993e-168   NTclustered gi|9627014|ref|NC_001514.1| 11856 g30102 i0 100 3.75840978593272 327 0 100 0 1 327 4724 4398 Squirrel monkey retrovirus - HLB, complete genome blastn 1229 604 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Betaretrovirus squmon

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;